Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1648.3 810 100.0
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1466.4 814 89.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1446.0 813 88.1
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1440.6 813 87.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1437.2 813 87.7
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1428.3 814 87.3
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1399.4 812 85.0
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1397.1 811 86.4
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1396.3 812 85.5
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1385.9 811 85.7
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1383.6 812 85.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1378.6 803 85.9
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1375.9 812 85.0
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1372.8 812 84.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1368.2 804 85.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1362.8 798 85.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1361.7 800 85.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1336.6 805 83.5
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1245.0 819 75.9
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1238.0 818 75.4
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1237.2 822 74.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1237.2 818 75.8
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1234.9 818 75.7
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1229.5 817 75.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1225.3 821 74.9
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1223.4 815 74.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1222.2 819 75.5
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1215.7 817 74.4
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1215.3 817 74.4
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1207.2 817 74.2
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1205.7 815 74.1
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1203.0 817 73.9
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1132.5 831 69.4
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1114.4 826 67.1
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1112.8 823 69.0
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.6e-306 1055.8 825 64.8
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.9e-303 1045.0 824 64.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.6e-301 1037.7 829 63.9
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 6.1e-301 1037.3 832 63.7
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.8e-300 1035.8 825 63.4
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.9e-300 1034.6 827 63.5
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.9e-300 1034.6 829 64.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.9e-300 1034.6 825 63.3
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 6.7e-300 1033.9 825 64.2
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 2.5e-299 1031.9 828 65.2
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.2e-298 1028.9 830 62.9
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 2.4e-297 1025.4 843 63.0
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.4e-296 1021.5 825 62.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 5.9e-296 1020.8 828 64.0
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.3e-295 1019.6 863 61.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.9e-295 1018.5 829 63.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 8.5e-295 1016.9 828 63.4
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.4e-294 1016.1 827 63.2
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.4e-294 1016.1 831 62.7
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.6e-293 1011.5 826 63.6
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 1.1e-291 1006.5 830 61.3
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.5e-291 1006.1 827 62.5
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.8e-290 1001.9 828 61.7
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 7.7e-288 993.8 837 61.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.7e-287 992.6 831 61.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.7e-287 992.6 837 60.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.5e-286 989.6 836 60.4
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.6e-285 986.1 830 60.4
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.5e-283 979.5 829 61.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.3e-283 978.4 824 61.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 5.7e-283 977.6 832 61.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.7e-282 976.1 829 61.0
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.8e-282 975.3 820 60.6
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 8.2e-282 973.8 834 59.8
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 7.0e-281 970.7 823 61.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.6e-280 968.8 831 60.4
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 3.5e-280 968.4 823 61.0
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 4.5e-280 968.0 836 59.9
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 4.5e-280 968.0 832 59.6
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.0e-279 966.8 830 59.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 3.2e-278 961.8 824 59.5
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.5e-278 961.1 844 59.2
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.4e-276 956.4 828 59.2
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.2e-275 953.4 828 58.8
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.4e-275 951.4 834 58.5
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 7.5e-275 950.7 834 58.2
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.8e-274 948.7 818 58.9
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.4e-273 945.7 836 58.6
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.4e-273 945.7 831 58.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.1e-273 944.9 834 57.9
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 7.0e-273 944.1 805 60.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 9.1e-273 943.7 816 59.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.0e-271 940.3 868 56.5
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 5.0e-271 937.9 811 58.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 6.5e-271 937.6 821 57.5
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.5e-270 936.4 879 55.2
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.5e-270 935.6 837 58.5
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 5.5e-270 934.5 813 60.1
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.6e-269 932.9 826 58.2
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.7e-269 932.2 865 57.0
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 6.1e-269 931.0 817 57.8
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.2e-267 926.8 821 57.7
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.0e-267 926.0 835 58.1
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 2.6e-267 925.6 835 58.6
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.4e-267 925.2 702 66.8
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 4.4e-267 924.9 826 56.2
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.7e-267 924.5 835 58.6
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 5.7e-267 924.5 718 64.9
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.2e-266 922.5 835 58.3
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.4e-265 919.8 817 57.3
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 1.4e-265 919.8 826 56.7
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 3.1e-265 918.7 823 59.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 4.1e-265 918.3 824 58.1
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.4e-265 917.9 821 57.4
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.6e-264 916.4 835 57.8
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.0e-263 913.7 821 57.2
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 3.3e-262 908.7 827 56.3
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 3.3e-262 908.7 752 61.6
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 6.1e-261 904.4 823 58.8
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 4.0e-260 901.7 773 59.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.2e-260 901.4 767 61.1
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.5e-259 899.8 831 58.6
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.7e-258 896.3 818 56.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.4e-257 892.5 835 57.2
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.0e-255 887.1 835 56.5
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 7.3e-254 880.9 736 60.5
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 4.9e-250 868.2 819 56.3
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 8.3e-250 867.5 823 56.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 7.0e-249 864.4 819 55.7
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 2.7e-248 862.4 858 54.4
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.0e-247 860.5 830 54.1
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 7.5e-243 844.3 765 57.1
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.9e-242 841.6 733 59.3
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.4e-241 840.1 761 56.5
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 3.1e-236 822.4 823 52.7
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.6e-235 819.3 816 51.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.4e-235 818.9 819 53.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 4.4e-235 818.5 819 52.7
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.4e-233 813.5 633 64.0
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 4.3e-230 802.0 833 52.3
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 1.6e-229 800.0 820 52.0
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 5.2e-228 795.0 824 51.5
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.0e-227 793.1 823 52.1
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 5.3e-220 768.5 692 57.4
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 5.4e-217 758.4 818 49.1
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 3.0e-215 752.7 815 51.2
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.1e-214 750.7 835 50.7
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.7e-173 614.0 581 58.2
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.6e-171 606.7 704 48.6
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 5.5e-169 599.0 901 40.4
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 8.0e-160 568.5 850 38.1
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.7e-157 560.8 916 38.2
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 8.6e-146 521.9 426 60.6
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.6e-145 519.2 921 35.9
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.1e-136 490.7 406 62.1
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 6.0e-131 472.6 908 34.8
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.1e-120 437.6 450 53.1
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.2e-117 427.6 628 38.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 2.1e-112 411.0 321 65.7
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.9e-105 387.9 515 43.7
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.7e-101 374.8 294 65.3
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 4.6e-83 313.5 258 63.2
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.6e-80 305.1 648 34.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.1e-80 304.7 253 58.9
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.1e-80 304.7 312 50.6
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 3.2e-68 264.2 224 58.9
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.4e-63 248.8 933 25.3
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.4e-63 248.1 156 75.6
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 5.9e-62 243.4 256 50.4
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 6.7e-58 229.9 265 52.5
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.0e-50 206.1 889 24.2
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-47 196.1 119 79.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.9e-44 185.3 196 51.5
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 3.6e-43 181.0 205 49.3
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 4.7e-43 180.6 204 48.5
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 7.5e-41 173.3 546 27.7
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.4e-39 167.2 189 48.1
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.7e-35 154.1 100 73.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-33 149.4 100 69.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 7.3e-28 130.2 99 63.6
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.2e-26 124.0 371 27.0
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 3.5e-22 111.3 96 60.4
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.8e-18 99.0 97 50.5
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.5e-17 93.6 107 40.2
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-16 92.8 107 40.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-16 92.8 107 40.2
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.0e-15 87.0 111 40.5
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.5e-12 79.3 84 45.2
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 4.9e-08 64.3 114 37.7
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.1e-07 60.5 107 31.8
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 4.6e-06 57.8 42 57.1


User provided reference genes

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