Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.0e-81 305.1 150 100.0
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.3e-76 289.7 150 94.0
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.0e-68 263.5 141 90.1
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.3e-68 263.1 150 86.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.7e-68 262.7 141 88.7
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.7e-68 262.7 141 88.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.0e-68 261.9 141 89.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.1e-65 253.4 149 81.2
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.4e-65 253.1 149 80.5
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 5.8e-64 247.7 149 79.9
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.3e-63 246.5 149 77.9
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 6.6e-60 234.2 153 73.2
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.2e-54 215.3 129 78.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 9.6e-51 203.8 153 65.4
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.0e-48 196.1 153 61.4
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 3.4e-48 195.3 153 59.5
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.4e-48 195.3 153 60.1
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.6e-48 194.1 153 60.8
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.3e-47 193.4 153 58.8
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.9e-47 192.2 153 60.1
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.9e-47 192.2 153 60.1
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 3.8e-47 191.8 153 59.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 4.9e-47 191.4 153 60.1
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 4.9e-47 191.4 153 58.8
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 4.9e-47 191.4 153 59.5
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.4e-46 189.9 153 58.2
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.9e-46 189.5 153 59.5
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.4e-46 189.1 153 58.2
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.4e-46 189.1 153 57.5
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 5.4e-46 188.0 153 58.8
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.3e-46 187.2 153 58.8
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 9.3e-46 187.2 153 58.2
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.6e-45 186.4 153 57.5
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.1e-45 186.0 153 58.2
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 3.5e-45 185.3 153 56.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 6.0e-45 184.5 153 56.2
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 6.0e-45 184.5 153 56.9
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 6.0e-45 184.5 153 54.9
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 6.0e-45 184.5 153 56.2
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 7.8e-45 184.1 153 57.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.3e-44 183.3 153 59.5
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 1.3e-44 183.3 153 56.2
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.7e-44 183.0 153 56.9
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.0e-44 182.2 153 58.8
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 3.9e-44 181.8 153 54.9
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.9e-44 181.8 153 54.9
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 5.1e-44 181.4 125 66.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 5.1e-44 181.4 153 58.8
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.6e-44 181.0 153 53.6
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.1e-43 180.3 153 56.9
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.9e-43 179.5 150 54.7
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.9e-43 179.5 153 55.6
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.9e-43 179.5 152 57.2
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 3.3e-43 178.7 151 57.6
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 4.3e-43 178.3 153 56.9
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 4.3e-43 178.3 152 55.3
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.3e-43 178.3 153 54.9
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.6e-43 177.9 153 52.9
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 5.6e-43 177.9 153 56.2
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 9.6e-43 177.2 153 55.6
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 9.6e-43 177.2 172 52.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.3e-42 176.8 153 52.9
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.3e-42 176.8 152 57.2
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.3e-42 176.8 153 54.2
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.3e-42 176.8 153 56.2
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 1.6e-42 176.4 151 57.0
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.6e-42 176.4 126 65.1
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.1e-42 176.0 153 52.3
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.8e-42 175.6 151 57.0
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.6e-42 175.3 153 54.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 3.6e-42 175.3 153 54.9
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 4.8e-42 174.9 153 54.9
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 6.2e-42 174.5 153 54.9
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 8.1e-42 174.1 153 54.9
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.1e-42 174.1 151 55.6
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.1e-42 174.1 153 53.6
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.1e-42 174.1 126 64.3
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.1e-41 173.7 153 54.2
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.1e-41 173.7 151 55.0
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.4e-41 173.3 153 53.6
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.4e-41 173.3 153 53.6
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.8e-41 172.9 153 54.2
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.8e-41 172.9 151 55.0
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 3.1e-41 172.2 153 54.2
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 3.1e-41 172.2 153 52.9
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.0e-41 171.8 151 55.0
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 4.0e-41 171.8 153 54.9
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 4.0e-41 171.8 154 56.5
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 5.3e-41 171.4 151 55.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 6.9e-41 171.0 151 54.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.2e-40 170.2 154 53.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.2e-40 170.2 154 53.2
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 5.8e-40 167.9 153 54.2
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 9.9e-40 167.2 153 54.2
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.9e-40 167.2 153 51.6
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.9e-40 167.2 153 51.6
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.3e-39 166.8 123 59.3
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.7e-39 166.4 151 56.3
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.9e-39 165.6 153 52.9
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.9e-39 164.9 153 51.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.1e-38 163.7 150 54.0
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-38 163.7 153 51.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.4e-38 163.3 151 51.7
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-38 162.9 151 56.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.2e-38 161.8 143 53.1
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.2e-37 160.2 153 52.9
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.1e-37 159.5 150 52.7
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.1e-37 159.5 153 51.0
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.5e-37 158.7 118 61.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 4.6e-37 158.3 123 58.5
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.3e-36 156.8 143 53.1
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.8e-36 156.4 150 50.7
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 3.9e-36 155.2 188 45.7
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 5.1e-36 154.8 145 53.1
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 8.7e-36 154.1 115 63.5
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.1e-35 153.7 160 47.5
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.5e-35 152.5 212 40.1
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 3.3e-35 152.1 143 50.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 9.0e-33 144.1 150 48.0
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.5e-32 143.3 100 67.0
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.0e-32 142.9 107 57.9
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 2.6e-32 142.5 107 58.9
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 5.8e-32 141.4 151 48.3
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 7.1e-30 134.4 153 45.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.1e-29 132.9 101 60.4
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 6.0e-29 131.3 92 64.1
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.0e-28 130.6 104 57.7
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.9e-27 126.3 110 57.3
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 3.7e-26 122.1 123 48.0
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.4e-25 120.2 126 47.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 2.6e-24 115.9 127 48.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.2e-23 112.8 145 42.8
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.2e-22 109.0 125 50.4
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 8.7e-20 100.9 133 44.4
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 2.4e-17 92.8 142 37.3
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.9e-15 85.9 81 51.9
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 3.6e-13 79.0 104 37.5
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 4.6e-13 78.6 126 36.5
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.3e-12 76.3 58 56.9
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.3e-12 76.3 58 56.9
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 2.3e-12 76.3 50 60.0
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 3.9e-12 75.5 118 33.9


User provided reference genes

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