Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.7e-232 808.9 389 100.0
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.4e-223 777.3 389 96.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.0e-221 773.1 389 95.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.5e-220 768.5 389 95.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 5.3e-218 760.8 389 95.1
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.9e-215 752.3 393 93.1
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.2e-214 749.6 394 92.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.7e-214 748.4 392 92.6
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 4.6e-214 747.7 386 93.5
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 2.1e-211 738.8 391 92.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 6.2e-211 737.3 391 92.3
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.1e-210 734.9 391 92.8
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 4.0e-210 734.6 394 91.4
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 4.0e-210 734.6 394 91.4
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.5e-209 732.6 391 92.6
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.0e-209 732.3 396 90.7
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.3e-204 714.9 389 88.2
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 9.0e-202 706.8 375 90.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.4e-201 704.9 395 89.4
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.4e-199 699.5 389 86.6
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 4.1e-194 681.4 368 91.6
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.5e-193 679.5 368 91.8
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.1e-186 654.8 389 82.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 7.7e-185 650.6 395 79.7
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.9e-183 646.0 387 80.6
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.2e-183 645.2 397 79.1
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.2e-183 645.2 383 82.8
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.5e-183 644.4 388 79.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 7.2e-183 644.0 388 79.6
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 7.2e-183 644.0 387 81.7
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.7e-182 641.3 389 79.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 3.0e-181 638.6 345 87.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.5e-180 636.3 390 80.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.5e-180 636.3 387 81.1
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.5e-180 636.3 354 85.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.5e-180 636.3 388 80.7
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.0e-180 636.0 371 82.5
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.6e-180 635.6 344 86.6
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.3e-180 635.2 347 86.5
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.3e-180 635.2 380 81.6
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.7e-180 634.4 390 79.5
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.7e-180 633.6 394 79.2
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.7e-179 632.9 388 79.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.2e-179 632.5 390 79.2
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.8e-179 632.1 388 78.6
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.7e-179 631.7 391 78.8
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 4.8e-179 631.3 388 79.6
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.2e-179 630.6 390 79.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.2e-179 630.6 393 78.9
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.1e-178 630.2 343 87.2
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.1e-178 630.2 347 85.3
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.4e-178 629.8 405 77.5
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.8e-178 629.4 350 85.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.4e-178 629.0 390 79.0
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 3.1e-178 628.6 386 80.1
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 5.3e-178 627.9 389 79.7
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.0e-178 627.5 390 78.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.6e-177 625.5 374 79.7
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 3.5e-177 625.2 397 77.8
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 4.5e-177 624.8 347 84.7
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 5.9e-177 624.4 384 78.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.7e-177 624.0 339 87.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 7.7e-177 624.0 382 79.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 7.7e-177 624.0 382 78.8
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-176 623.6 393 78.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.7e-176 622.9 340 86.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.9e-176 622.1 399 77.7
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.9e-176 622.1 400 77.5
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 3.8e-176 621.7 403 76.7
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 8.5e-176 620.5 338 87.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 8.5e-176 620.5 395 78.0
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-175 620.2 382 79.1
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.1e-175 620.2 394 77.7
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.5e-175 619.0 398 76.6
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 3.2e-175 618.6 380 78.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 4.2e-175 618.2 387 77.8
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.2e-174 616.7 388 77.1
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 4.7e-174 614.8 389 77.9
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 8.0e-174 614.0 369 79.7
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.4e-173 613.2 370 79.7
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.8e-173 612.8 386 76.4
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 6.7e-173 610.9 399 75.9
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.3e-172 608.6 393 75.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 4.4e-172 608.2 394 75.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 4.4e-172 608.2 393 75.8
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.4e-172 608.2 342 84.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.4e-172 608.2 391 76.7
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 7.4e-172 607.4 380 78.9
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 9.7e-172 607.1 340 85.9
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 9.7e-172 607.1 400 75.5
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 4.8e-171 604.7 395 75.7
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 4.8e-171 604.7 397 73.8
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 6.3e-171 604.4 373 77.7
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 9.1e-170 600.5 392 75.5
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 3.5e-169 598.6 406 72.7
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.7e-168 596.3 405 74.3
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.7e-168 596.3 340 83.5
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.9e-168 595.5 340 83.5
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.8e-168 595.1 418 72.0
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 5.0e-168 594.7 351 80.6
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 5.0e-168 594.7 382 75.1
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.5e-168 594.3 301 91.0
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.1e-167 593.6 389 74.3
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.7e-166 588.2 390 73.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.4e-165 586.6 308 88.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.6e-164 582.4 376 77.9
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.8e-163 578.2 317 85.8
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.2e-159 565.5 371 74.4
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.6e-158 562.0 362 77.1
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.2e-157 558.1 349 76.8
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-156 556.6 355 74.4
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.8e-155 552.4 347 76.9
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.1e-154 548.5 341 75.1
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 5.4e-154 548.1 385 71.9
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.0e-152 543.9 398 71.4
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.0e-152 543.9 497 58.1
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.7e-152 543.1 550 54.4
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 5.0e-152 541.6 367 71.1
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.8e-150 535.8 550 55.1
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 6.8e-149 531.2 303 80.2
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.7e-148 528.1 337 73.0
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-142 510.4 243 97.1
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.4e-133 480.3 345 67.0
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.1e-130 470.7 324 71.3
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.3e-127 458.0 393 63.4
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 9.9e-124 447.6 307 67.4
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.7e-123 446.8 345 61.4
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-113 413.7 287 72.8
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.8e-110 402.9 254 76.8
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.5e-108 397.1 220 85.5
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.5e-105 386.0 212 86.3
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.5e-103 380.6 235 80.9
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 9.6e-103 377.9 318 58.2
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.8e-101 373.6 339 54.6
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-95 354.4 219 77.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.3e-90 334.7 205 76.6
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.1e-89 333.6 288 54.2
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 5.9e-68 262.3 329 43.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.0e-67 259.2 341 41.1
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.5e-66 256.9 317 43.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 3.2e-66 256.5 340 40.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 5.5e-66 255.8 127 92.1
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.7e-65 253.4 338 40.2
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.1e-61 238.4 324 40.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.4e-55 219.5 334 38.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.8e-54 216.1 179 63.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.7e-51 207.6 258 41.5
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.5e-47 192.2 114 83.3
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.7e-43 181.0 181 54.1
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 6.4e-30 136.0 116 66.4
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 3.5e-28 130.2 92 70.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.3e-24 117.5 159 45.3
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 7.5e-23 112.5 54 88.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.3e-19 101.7 62 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 8.6e-19 99.0 165 44.8
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.6e-15 87.4 93 55.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.9e-14 83.2 49 75.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 5.1e-11 73.2 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 6.2e-09 66.2 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.9e-06 57.4 31 77.4


User provided reference genes

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