Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 3.5e-247 857.8 429 100.0
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.9e-201 705.3 420 85.7
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 3.2e-200 701.8 421 86.2
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 4.6e-199 698.0 420 85.5
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 6.0e-191 671.0 421 82.2
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.2e-186 656.8 445 78.7
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.0e-185 653.7 422 80.8
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.3e-185 653.3 427 81.3
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.4e-184 649.8 424 80.4
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 3.2e-184 648.7 439 78.1
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.7e-177 626.3 455 73.6
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.5e-170 603.2 386 82.1
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 2.1e-151 539.7 398 71.6
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.3e-136 489.2 421 62.5
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.8e-126 456.8 421 57.5
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.8e-126 456.8 432 56.7
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 5.2e-126 455.3 437 55.8
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 8.9e-126 454.5 414 57.5
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.2e-125 454.1 420 56.7
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 7.5e-125 451.4 413 57.4
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.9e-124 449.5 412 57.8
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 4.9e-124 448.7 429 55.5
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 5.4e-123 445.3 429 55.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 7.0e-123 444.9 420 56.7
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 4.6e-122 442.2 415 57.3
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.3e-121 439.9 417 57.8
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 5.1e-121 438.7 404 58.4
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.9e-120 436.8 421 54.9
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.2e-119 434.1 421 55.1
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.1e-119 433.3 421 54.6
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 8.1e-119 431.4 454 54.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.8e-118 430.3 412 58.0
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 3.1e-118 429.5 413 57.1
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.1e-118 429.5 439 54.7
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.9e-118 427.9 410 55.6
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.2e-117 427.6 416 55.8
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.5e-117 427.2 436 55.0
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.6e-117 426.4 421 55.8
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 9.9e-117 424.5 422 54.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 8.3e-116 421.4 433 52.9
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.4e-115 420.6 416 54.8
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 1.9e-115 420.2 422 55.0
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 3.2e-115 419.5 418 55.0
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.2e-115 419.5 410 54.1
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 9.2e-115 417.9 420 54.0
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.2e-114 417.5 416 53.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-114 417.5 440 51.8
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.1e-114 416.8 411 55.7
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.1e-114 416.8 440 52.0
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 3.5e-114 416.0 424 54.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.6e-114 415.6 381 58.8
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 6.0e-114 415.2 412 53.6
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 6.0e-114 415.2 420 54.8
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.0e-114 415.2 413 55.2
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 3.0e-113 412.9 416 54.8
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.1e-112 411.0 410 54.9
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.5e-112 409.8 410 54.4
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.3e-112 409.5 410 53.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 4.3e-112 409.1 412 54.6
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 7.3e-112 408.3 410 55.4
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 7.3e-112 408.3 413 54.0
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 9.5e-112 407.9 386 57.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.1e-111 406.8 410 53.9
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.1e-111 404.8 426 53.3
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.1e-110 404.4 431 52.7
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 3.1e-110 402.9 409 54.8
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.4e-109 399.1 422 51.9
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 4.4e-109 399.1 352 58.8
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 5.8e-109 398.7 359 57.9
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 7.6e-109 398.3 380 56.6
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.4e-107 394.0 417 52.5
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 7.1e-107 391.7 422 51.4
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 6.0e-106 388.7 413 51.3
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.7e-105 387.1 413 52.8
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.9e-104 383.6 360 56.4
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.0e-102 375.9 416 51.9
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.4e-101 372.5 447 48.5
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 4.4e-101 372.5 480 45.4
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 4.6e-98 362.5 374 53.5
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.0e-97 361.3 359 53.5
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 7.3e-96 355.1 402 50.7
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 7.3e-96 355.1 348 55.5
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 5.3e-94 349.0 350 52.6
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.6e-93 346.7 378 50.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.9e-91 340.5 357 54.3
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.2e-91 339.7 409 47.4
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 3.0e-89 333.2 441 46.7
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.9e-89 332.8 408 47.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 7.4e-88 328.6 333 54.1
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 6.2e-87 325.5 381 48.0
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 1.3e-84 317.8 312 56.4
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.2e-83 313.2 392 46.7
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.6e-82 310.8 359 48.5
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 6.0e-82 308.9 423 42.6
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.3e-81 307.0 334 50.3
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.6e-79 300.8 275 57.5
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 6.2e-79 298.9 519 37.6
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.9e-75 287.3 432 41.9
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 7.1e-75 285.4 276 55.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 1.2e-74 284.6 224 62.5
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.5e-69 267.7 346 48.0
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.1e-64 251.5 528 33.9
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.5e-64 251.1 287 50.2
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 7.4e-64 248.8 442 36.7
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.1e-62 245.0 310 45.8
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 4.1e-62 243.0 276 50.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.8e-60 236.5 195 59.5
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-58 231.1 189 59.3
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.6e-58 229.9 267 48.3
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.7e-55 221.1 230 52.2
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 4.1e-54 216.5 429 37.1
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.5e-53 213.4 234 47.9
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.9e-52 210.3 353 39.4
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 2.0e-45 187.6 405 35.1
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.9e-43 181.0 200 48.0
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 4.2e-43 179.9 304 40.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.2e-39 167.5 275 37.8
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 4.1e-38 163.3 173 56.1
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.3e-36 158.3 193 47.2
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 2.3e-33 147.5 409 32.0
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 3.0e-33 147.1 155 53.5
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 2.2e-31 141.0 111 58.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.1e-30 136.7 108 57.4
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 2.7e-29 134.0 146 51.4
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.3e-27 127.1 419 29.1
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.6e-26 123.6 820 22.2
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 4.7e-26 123.2 127 49.6
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 6.1e-26 122.9 87 67.8
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 3.0e-25 120.6 95 65.3
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.0e-24 117.9 149 47.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.4e-24 116.7 135 48.1
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.7e-23 114.8 86 65.1
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 4.9e-23 113.2 93 62.4
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.7e-21 107.5 413 24.7
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 8.3e-15 85.9 107 44.9
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 7.0e-14 82.8 235 29.4
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 3.5e-13 80.5 315 26.0
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.3e-12 77.8 273 26.4
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.4e-06 56.6 46 60.9


User provided reference genes

Program Settings