Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 2.4e-139 498.8 252 100.0
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.4e-134 483.0 252 94.8
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.0e-131 470.7 252 93.7
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.3e-120 434.1 250 87.6
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 9.5e-120 433.7 251 88.0
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 9.2e-115 417.2 252 83.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 6.0e-114 414.5 252 82.5
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 1.8e-110 402.9 230 85.7
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 1.2e-109 400.2 252 80.6
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 1.3e-108 396.7 255 78.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 4.9e-108 394.8 258 76.7
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 7.8e-106 387.5 253 75.1
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.0e-105 387.1 254 76.4
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 2.3e-105 386.0 259 75.3
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 3.0e-105 385.6 255 77.3
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 6.6e-105 384.4 240 80.4
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 8.7e-105 384.0 256 75.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 2.5e-104 382.5 251 77.7
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 3.3e-104 382.1 253 78.7
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 5.6e-104 381.3 259 74.9
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.3e-103 380.2 256 74.2
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 6.2e-103 377.9 249 76.3
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.4e-102 376.7 253 78.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 1.8e-102 376.3 252 76.2
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.8e-102 376.3 254 77.2
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 3.1e-102 375.6 247 76.1
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.1e-102 375.6 254 78.0
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 5.3e-102 374.8 249 76.3
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 9.0e-102 374.0 249 77.5
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 1.2e-101 373.6 252 75.4
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.5e-101 373.2 254 74.0
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.6e-101 372.5 272 71.3
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 3.4e-101 372.1 249 75.5
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 4.5e-101 371.7 255 72.9
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 4.5e-101 371.7 259 73.7
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 7.6e-101 370.9 251 77.3
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 7.6e-101 370.9 254 77.2
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 9.9e-101 370.5 252 77.0
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.2e-100 369.4 254 76.8
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 2.9e-100 369.0 246 75.6
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 6.4e-100 367.9 248 74.6
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 8.4e-100 367.5 253 75.1
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.1e-99 367.1 277 71.5
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.4e-99 366.7 251 75.7
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.9e-99 366.3 258 71.7
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.9e-99 366.3 257 74.3
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.9e-99 366.3 253 75.5
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 2.4e-99 365.9 252 73.0
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 3.2e-99 365.5 225 80.9
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 3.2e-99 365.5 247 72.9
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 4.2e-99 365.2 247 75.3
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 4.2e-99 365.2 245 76.3
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 5.4e-99 364.8 243 74.9
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 9.3e-99 364.0 262 71.8
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 9.3e-99 364.0 227 80.2
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 9.3e-99 364.0 251 75.3
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.6e-98 363.2 247 73.3
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 2.7e-98 362.5 253 71.5
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 2.7e-98 362.5 225 79.6
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 3.5e-98 362.1 261 72.0
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 4.6e-98 361.7 252 71.8
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 7.9e-98 360.9 228 80.7
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 3.9e-97 358.6 251 71.7
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 1.1e-96 357.1 248 73.0
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.5e-96 356.7 230 77.0
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 4.3e-96 355.1 251 71.3
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.1e-95 352.8 255 71.8
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 2.1e-95 352.8 257 70.4
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 3.1e-94 349.0 255 69.0
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 6.9e-94 347.8 216 80.1
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.2e-93 347.1 242 74.4
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.5e-93 346.7 249 69.5
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 2.2e-92 342.8 230 73.9
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 3.8e-92 342.0 242 73.6
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 6.4e-92 341.3 252 70.6
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.4e-91 340.1 236 72.5
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.9e-91 339.7 255 68.2
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.1e-90 336.3 242 72.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.5e-90 335.5 242 71.9
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.0e-89 334.0 250 70.0
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 6.7e-89 331.3 248 68.5
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.1e-88 330.5 242 71.1
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 4.8e-87 325.1 207 78.7
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 8.2e-87 324.3 243 68.3
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 1.2e-85 320.5 248 67.7
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.0e-84 317.4 249 64.3
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.0e-84 317.4 235 68.1
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.4e-83 313.5 245 66.1
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 1.9e-83 313.2 244 65.6
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 9.3e-83 310.8 249 65.9
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 9.3e-83 310.8 235 68.5
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 9.3e-83 310.8 199 78.4
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 4.6e-82 308.5 243 68.7
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 3.0e-81 305.8 256 62.9
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 1.1e-80 303.9 236 67.8
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 4.3e-80 302.0 236 67.8
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 5.7e-80 301.6 236 67.8
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 8.2e-79 297.7 248 66.5
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 8.5e-76 287.7 273 59.0
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.0e-73 280.8 163 81.6
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 3.3e-72 275.8 165 80.0
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 1.3e-71 273.9 152 85.5
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.6e-69 266.2 168 77.4
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.8e-68 262.3 169 76.3
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.1e-67 260.8 182 74.7
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.6e-64 249.6 171 76.0
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.7e-63 246.9 169 75.7
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.1e-62 244.2 245 54.7
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 3.5e-61 239.2 246 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.1e-59 234.2 216 58.8
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.3e-56 222.6 175 70.9
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 2.4e-54 216.5 186 60.2
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 9.4e-43 177.9 246 45.5
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 5.9e-37 158.7 103 76.7
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 3.6e-34 149.4 88 80.7
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 6.8e-33 145.2 93 79.6
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.4e-32 142.9 215 41.9
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 5.4e-30 135.6 192 47.9
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.6e-29 134.0 80 77.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 2.3e-28 130.2 87 72.4
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 6.1e-26 122.1 73 76.7
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-22 111.3 198 41.9
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.0e-21 107.1 90 56.7
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.3e-20 104.4 58 84.5
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.1e-17 94.7 112 55.4
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 2.3e-17 93.6 56 78.6
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 6.8e-17 92.0 91 56.0
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.5e-16 90.9 60 71.7
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 5.8e-16 89.0 137 34.3
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 2.1e-13 80.5 182 35.7
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 4.6e-13 79.3 61 65.6
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 6.8e-09 65.5 64 54.7
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 2.2e-07 60.5 42 59.5


User provided reference genes

Program Settings