Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 3.5e-178 628.2 330 100.0
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.7e-177 625.9 330 99.7
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 4.7e-175 617.8 330 97.9
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.8e-161 571.6 328 91.5
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 2.5e-160 568.9 330 90.3
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 9.5e-160 567.0 328 91.2
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 9.8e-141 503.8 327 78.9
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.4e-139 500.0 326 78.8
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 7.8e-138 494.2 338 78.4
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 2.5e-136 489.2 307 83.1
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 6.2e-135 484.6 323 78.0
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 3.4e-133 478.8 325 74.8
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.3e-129 466.8 329 73.9
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.5e-128 462.6 328 73.5
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.3e-128 462.2 297 78.1
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 7.3e-128 461.1 358 70.7
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 9.5e-128 460.7 323 73.7
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.5e-128 460.7 328 72.6
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-127 459.9 328 73.2
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.1e-127 459.5 326 73.6
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.1e-127 459.5 318 75.2
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 6.2e-127 458.0 328 70.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.1e-126 455.7 317 73.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.0e-126 455.3 334 71.9
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 5.2e-126 454.9 335 71.6
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.5e-125 453.4 338 72.2
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.4e-125 452.2 329 73.6
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 7.6e-125 451.1 311 73.3
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.6e-125 451.1 327 72.5
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.9e-124 449.1 309 74.1
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 3.8e-124 448.7 338 71.3
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 6.4e-124 448.0 291 79.4
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.1e-123 447.2 331 71.3
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.9e-123 446.4 326 71.8
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.4e-123 444.9 322 71.1
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 5.4e-123 444.9 310 72.3
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.7e-121 439.9 325 70.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.7e-121 439.9 399 63.7
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.7e-121 439.9 314 75.8
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 2.3e-121 439.5 322 72.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 8.7e-121 437.6 328 70.4
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 5.6e-120 434.9 313 72.5
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 9.6e-120 434.1 326 69.6
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.3e-119 433.7 328 68.3
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.3e-119 433.7 324 71.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.6e-119 433.3 316 70.9
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.6e-119 433.3 324 70.7
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.6e-119 432.2 322 69.6
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.6e-119 432.2 322 69.9
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 4.8e-119 431.8 330 69.1
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 8.1e-119 431.0 316 72.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 8.1e-119 431.0 327 70.9
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.4e-118 430.3 320 69.7
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 2.4e-118 429.5 322 70.5
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.4e-118 429.5 322 71.1
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.1e-118 429.1 326 69.9
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 4.0e-118 428.7 411 57.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 5.3e-118 428.3 322 70.2
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.2e-117 427.2 292 75.0
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 2.6e-117 426.0 331 67.4
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.4e-117 425.6 320 70.3
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 9.9e-117 424.1 318 69.5
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.2e-116 422.9 287 75.6
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 2.2e-116 422.9 349 65.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.9e-116 422.5 326 68.4
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.8e-116 422.2 329 67.5
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.9e-116 421.8 329 67.5
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.9e-116 421.8 329 67.5
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 4.9e-116 421.8 320 69.7
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 8.4e-116 421.0 320 67.8
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 8.4e-116 421.0 341 66.9
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.1e-115 420.6 312 71.5
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.4e-115 420.2 323 67.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.4e-115 420.2 330 69.1
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.4e-115 419.5 329 67.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 5.4e-115 418.3 328 68.3
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 6.0e-114 414.8 325 68.0
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.0e-113 414.1 336 66.4
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.3e-113 413.7 290 73.4
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.7e-113 413.3 320 68.8
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.3e-113 412.9 320 66.6
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 6.6e-113 411.4 316 69.0
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 8.7e-113 411.0 330 65.2
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.9e-112 409.8 329 66.0
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.5e-112 409.5 327 65.1
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 3.3e-112 409.1 343 65.0
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 5.6e-112 408.3 344 64.8
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.3e-111 407.1 312 69.2
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-111 406.4 320 68.4
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.1e-111 406.4 320 68.4
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.8e-111 406.0 321 67.0
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.8e-111 406.0 318 68.6
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.8e-111 406.0 320 68.4
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.8e-110 403.3 326 66.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.4e-110 402.9 309 69.3
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.0e-110 402.1 288 70.8
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 4.0e-110 402.1 317 67.8
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.0e-110 402.1 287 70.0
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 5.3e-110 401.7 328 64.9
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.2e-109 400.6 319 67.1
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-109 399.8 318 67.0
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 2.0e-109 399.8 318 67.0
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-109 399.4 307 68.4
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 3.4e-109 399.1 323 67.5
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 3.4e-109 399.1 317 67.5
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 9.9e-109 397.5 318 67.6
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-108 397.1 317 67.2
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 8.4e-108 394.4 374 59.6
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.1e-107 394.0 321 64.8
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.6e-106 390.2 329 62.3
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.6e-106 390.2 322 66.1
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.1e-106 389.8 335 65.4
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.1e-106 389.8 312 66.7
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.7e-106 389.4 299 69.2
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.0e-106 388.3 261 75.1
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-105 386.0 317 66.9
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 3.0e-105 386.0 319 65.8
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 8.7e-105 384.4 285 67.7
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-104 382.9 335 63.6
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.4e-102 376.3 295 65.4
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.8e-101 371.7 308 64.3
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 7.6e-101 371.3 293 65.2
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 7.6e-101 371.3 318 63.5
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.9e-100 368.6 391 55.8
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.7e-98 362.8 346 59.8
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.6e-90 337.0 346 56.6
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 4.6e-90 335.5 318 59.4
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 6.1e-90 335.1 314 56.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 9.0e-86 321.2 317 56.2
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.5e-83 313.2 330 57.9
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 7.9e-82 308.1 325 57.5
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 5.1e-81 305.4 296 55.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 6.7e-81 305.1 296 55.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 9.7e-80 301.2 318 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.9e-77 292.0 329 49.2
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 9.4e-75 284.6 325 52.9
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.8e-71 273.1 252 55.2
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 7.0e-70 268.5 327 49.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.5e-69 267.3 190 79.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 7.7e-69 265.0 270 55.9
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.5e-68 261.9 180 73.9
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.1e-67 261.2 181 74.6
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 4.2e-67 259.2 324 48.8
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 8.8e-65 251.5 231 63.2
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 7.0e-62 241.9 266 56.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 5.0e-60 235.7 246 58.5
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.2e-59 233.0 150 76.0
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.2e-51 206.1 135 77.8
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-47 193.7 186 62.9
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.2e-42 177.9 303 39.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.6e-42 177.6 161 65.8
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.5e-40 171.0 118 77.1
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.1e-38 162.9 160 62.5
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.9e-31 139.4 352 34.1
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-28 131.7 148 56.1
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.6e-26 124.4 298 33.2
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-24 117.5 73 76.7
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.2e-21 108.2 90 56.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 5.1e-20 102.8 78 65.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 4.7e-18 96.3 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.2e-17 92.8 90 54.4
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.9e-14 84.3 61 72.1
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.2e-10 69.3 43 69.8
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.4e-09 68.2 80 45.0
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.4e-09 67.4 106 45.3
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 6.8e-09 65.9 91 45.1
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 3.4e-08 63.5 52 59.6
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 1.7e-07 61.2 68 48.5
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 8.4e-07 58.9 38 81.6


User provided reference genes

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