Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.7e-121 438.3 243 100.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.9e-110 401.7 242 92.1
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-109 400.2 243 90.1
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.6e-108 396.4 243 89.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.6e-108 395.2 243 88.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-103 379.4 243 82.3
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.1e-103 379.4 242 86.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.7e-103 379.0 243 85.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 3.5e-103 378.6 243 86.8
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 3.5e-103 378.6 243 85.6
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.5e-103 378.6 243 86.0
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 3.0e-102 375.6 243 85.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.2e-98 363.6 240 80.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.5e-93 346.7 244 76.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 5.6e-93 344.7 243 79.8
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 7.3e-93 344.4 241 80.1
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 7.3e-93 344.4 206 85.0
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.1e-92 342.8 206 84.5
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.8e-92 342.4 243 79.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.1e-91 340.5 243 79.0
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.4e-91 340.1 205 83.4
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.4e-91 339.3 240 74.2
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 5.3e-91 338.2 243 77.4
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 76.1
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 3.4e-90 335.5 243 72.4
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.5e-90 335.1 229 82.1
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.5e-90 335.1 241 73.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.5e-90 335.1 241 76.3
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 5.8e-90 334.7 243 77.0
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 9.9e-90 334.0 243 76.5
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 9.9e-90 334.0 243 72.4
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 9.9e-90 334.0 242 71.1
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.3e-89 333.6 241 78.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.7e-89 333.2 246 70.7
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.2e-89 332.8 241 76.8
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.2e-89 332.8 241 72.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.9e-89 332.4 243 72.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.9e-89 332.4 238 73.5
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 4.9e-89 331.6 243 74.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 78.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 6.4e-89 331.3 241 78.8
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 8.4e-89 330.9 241 71.4
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 76.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.2e-88 328.9 234 74.4
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.2e-88 328.9 240 70.8
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.2e-87 327.0 209 78.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-87 325.9 241 71.0
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.5e-87 325.5 229 80.8
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 3.5e-87 325.5 240 75.8
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 71.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 70.5
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 4.6e-87 325.1 205 81.0
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 6.0e-87 324.7 243 76.1
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.9e-87 324.3 240 75.8
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.0e-86 323.9 241 71.4
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.0e-86 323.9 206 79.1
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.8e-86 323.2 241 70.5
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.8e-86 323.2 241 75.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.9e-86 322.0 243 68.7
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.7e-86 320.9 241 70.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.1e-85 320.5 240 76.2
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.1e-85 320.5 198 83.3
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 206 79.6
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.5e-85 319.3 239 73.6
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 252 68.7
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.5e-85 319.3 237 74.3
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.5e-85 319.3 239 74.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 3.3e-85 318.9 243 74.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 75.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.3e-85 318.5 203 79.3
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.6e-84 316.6 240 73.8
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 3.7e-84 315.5 239 73.6
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.8e-84 315.1 202 80.2
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.2e-84 314.7 243 72.4
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.2e-84 314.7 205 79.5
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 2.4e-83 312.8 203 78.8
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 3.1e-83 312.4 200 78.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.3e-83 311.6 243 71.6
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-82 309.3 241 72.2
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-82 309.3 241 72.2
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 5.8e-82 308.1 241 71.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.8e-82 308.1 202 78.7
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.6e-82 307.8 243 71.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 7.6e-82 307.8 228 72.8
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 7.6e-82 307.8 241 67.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.6e-82 307.8 203 77.8
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 7.6e-82 307.8 199 78.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 2.2e-81 306.2 204 76.5
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-81 305.8 234 72.6
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.9e-81 305.8 244 67.2
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.1e-80 303.9 245 66.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.1e-80 303.9 205 75.1
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.4e-80 303.5 200 79.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 68.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.5e-80 302.8 245 66.5
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.5e-80 302.8 226 73.5
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 3.2e-80 302.4 211 82.5
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.2e-80 302.0 214 73.8
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 5.5e-80 301.6 241 67.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.5e-80 301.6 214 73.8
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 5.5e-80 301.6 243 71.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.6e-79 300.1 245 65.7
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.1e-79 299.7 245 65.7
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.7e-79 299.3 205 73.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.5e-79 298.9 206 76.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.6e-79 298.5 208 73.1
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.0e-78 297.4 195 77.9
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.3e-78 296.2 245 65.3
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 5.1e-78 295.0 245 64.9
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 6.7e-78 294.7 243 67.5
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 6.7e-78 294.7 215 70.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 6.7e-78 294.7 215 70.7
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 6.7e-78 294.7 246 68.7
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.1e-77 293.9 243 67.9
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 3.3e-77 292.4 215 70.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 3.3e-77 292.4 215 70.2
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.3e-77 292.0 244 68.0
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 6.2e-76 288.1 211 69.2
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 9.0e-75 284.3 204 72.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.7e-73 280.0 183 78.7
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.2e-72 275.8 243 60.9
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 9.3e-72 274.2 228 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.3e-70 270.4 197 70.6
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.0e-70 269.2 178 74.7
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 7.2e-64 248.1 198 64.1
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 9.1e-59 231.1 157 73.9
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.9e-57 226.1 213 60.6
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 6.5e-57 224.9 191 64.4
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 2.0e-53 213.4 245 52.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 4.4e-53 212.2 171 69.6
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 5.5e-48 195.3 133 73.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-44 183.3 213 53.1
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 4.1e-43 179.1 110 75.5
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.8e-38 163.7 176 51.1
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.7e-36 157.1 173 50.3
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.9e-34 148.7 91 97.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 7.7e-34 148.3 102 68.6
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.7e-29 132.1 188 41.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.8e-27 127.1 131 56.5
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 2.7e-26 123.2 86 67.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 6.3e-20 102.1 91 63.7
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.6e-16 89.0 189 31.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.4e-13 79.7 54 74.1
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.7e-10 70.1 188 28.2
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 3.5e-10 69.7 80 53.8
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 6.6e-09 65.5 83 48.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-06 57.8 63 54.0
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 8.9e-06 55.1 55 56.4


User provided reference genes

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