Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1431.8 716 100.0
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1407.5 716 98.3
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1399.4 716 97.5
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1321.6 716 91.8
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1293.1 712 90.0
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 0.0e+00 1243.0 738 85.9
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 0.0e+00 1205.7 671 89.7
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1142.1 716 77.5
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1123.2 716 76.5
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1119.0 716 75.1
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1117.8 716 75.7
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1114.4 716 74.4
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 716 75.1
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1106.3 716 75.4
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1105.9 713 75.5
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1104.0 716 75.6
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1101.7 710 75.5
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1100.5 716 74.3
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1100.1 703 76.2
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1098.6 702 75.6
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1095.1 716 75.8
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1094.3 702 75.9
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1092.0 716 73.9
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 0.0e+00 1088.9 700 76.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1088.6 702 74.1
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1088.6 716 73.6
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1086.2 703 75.2
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 0.0e+00 1085.9 702 76.6
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1083.9 697 75.5
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1083.2 709 74.8
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1080.5 716 73.3
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1079.7 716 73.5
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1076.6 711 74.7
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1076.2 711 74.7
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.9e-312 1073.9 711 74.1
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.5e-311 1072.4 711 75.0
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 2.0e-311 1072.0 717 73.6
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 4.4e-311 1070.8 703 73.1
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 1.1e-309 1066.2 702 73.8
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 5.3e-309 1063.9 721 73.2
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 4.5e-308 1060.8 703 72.7
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 4.2e-306 1054.3 717 70.4
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 9.4e-306 1053.1 716 71.9
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.7e-305 1051.6 701 72.3
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 2.7e-305 1051.6 711 71.4
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.7e-305 1051.6 734 70.6
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 3.0e-304 1048.1 711 72.0
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.0e-303 1045.4 698 72.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 2.6e-303 1045.0 711 72.0
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 5.7e-303 1043.9 716 71.5
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 8.3e-302 1040.0 710 72.7
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 750 69.5
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 3.1e-301 1038.1 706 71.8
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 707 71.6
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 3.8e-299 1031.2 708 72.0
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 801 65.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 5.5e-298 1027.3 702 72.4
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 5.5e-298 1027.3 708 71.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 711 70.6
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.6e-297 1025.8 710 71.5
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 2.8e-297 1025.0 708 71.2
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 8.0e-297 1023.5 708 72.3
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.4e-295 1018.1 704 71.6
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 5.7e-295 1017.3 714 70.3
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.7e-294 1015.8 704 70.7
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 3.7e-294 1014.6 714 69.6
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 1.8e-293 1012.3 703 70.4
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.2e-292 1009.6 732 69.5
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 2.8e-289 998.4 694 71.0
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 8.0e-289 996.9 692 69.9
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 8.9e-288 993.4 697 70.7
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.2e-287 993.0 697 70.6
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.7e-286 989.2 697 70.4
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 2.2e-286 988.8 692 70.7
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 6.4e-286 987.3 700 69.1
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.9e-285 985.7 693 70.4
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 9.2e-285 983.4 693 70.3
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 3.5e-284 981.5 706 68.8
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 7.8e-284 980.3 698 70.1
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 5.6e-282 974.2 718 67.7
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.1e-281 972.2 687 68.9
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 2.3e-280 968.8 698 69.8
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 2.3e-280 968.8 694 69.3
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 6.8e-280 967.2 787 62.0
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 4.1e-277 958.0 750 63.7
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 5.8e-271 937.6 710 66.1
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.4e-269 932.2 697 66.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 2.4e-264 915.6 717 65.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.6e-263 912.1 711 65.8
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.9e-261 906.0 603 73.0
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 7.8e-260 900.6 588 75.0
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.3e-259 899.8 720 63.2
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 4.8e-257 891.3 724 63.5
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.4e-256 889.8 562 75.8
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.0e-256 888.3 675 65.8
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 2.1e-249 865.9 709 61.8
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 6.2e-233 811.2 535 73.8
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 7.9e-220 767.7 527 71.0
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 3.4e-215 752.3 694 55.0
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.8e-206 722.2 702 53.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 4.7e-204 715.3 742 54.7
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 5.7e-186 655.2 698 49.7
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 4.5e-183 645.6 870 43.0
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 9.8e-178 627.9 451 67.6
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 2.8e-172 609.8 838 42.7
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 3.9e-166 589.3 694 46.7
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.2e-160 569.7 388 69.6
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 6.6e-158 562.0 488 57.4
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.3e-149 532.7 752 43.4
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 7.3e-149 531.9 740 43.0
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.9e-128 464.2 741 39.0
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 4.2e-128 463.0 702 39.0
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.3e-126 458.0 812 36.5
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.2e-121 440.7 338 68.9
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.4e-115 421.4 303 70.3
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.9e-104 384.4 346 58.7
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.8e-76 290.8 270 56.3
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.4e-75 287.7 201 69.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 9.2e-67 259.2 188 69.7
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 7.0e-59 233.0 164 67.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.5e-53 215.3 153 69.9
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 8.1e-39 166.4 115 70.4
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 7.6e-37 159.8 102 75.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 4.6e-34 150.6 180 50.6
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.2e-29 136.0 112 56.2
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.2e-26 125.9 100 66.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.6e-26 125.6 96 62.5
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 4.0e-22 110.9 149 46.3
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 2.0e-21 108.6 61 80.3
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.3e-17 95.9 81 59.3
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 6.2e-15 87.0 59 67.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.3e-12 79.3 63 60.3
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.4e-11 75.9 46 69.6
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.6e-10 72.4 45 73.3
CAN.G1017.2 Capsicum annuum HOM05D009823 ORTHO05D011888 1.0e-09 69.7 58 67.2
CAN.G734.4 Capsicum annuum HOM05D009823 ORTHO05D011888 1.9e-08 65.5 59 62.7
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 9.6e-08 63.2 38 73.7


User provided reference genes

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