Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.3e-121 438.3 217 100.0
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 5.0e-117 424.5 217 96.3
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 7.7e-110 400.6 216 92.6
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 3.8e-109 398.3 217 90.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.6e-107 391.7 214 88.8
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.0e-105 386.0 214 87.9
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.1e-100 370.2 202 89.1
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.0e-98 361.7 202 87.6
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 9.2e-95 350.5 216 80.1
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.9e-92 342.8 211 79.6
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 4.7e-91 338.2 216 76.4
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.3e-90 335.9 216 76.9
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 4.0e-90 335.1 216 75.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.5e-89 333.2 214 75.7
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.5e-89 333.2 216 75.9
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 5.7e-89 331.3 216 73.6
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 2.9e-88 328.9 214 73.4
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.9e-88 328.9 217 74.2
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.4e-87 326.6 206 75.2
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.4e-87 324.7 216 73.6
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 7.0e-87 324.3 214 73.8
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.6e-86 323.2 214 76.2
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.0e-86 322.8 217 72.8
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 5.9e-86 321.2 213 74.6
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 2.3e-85 319.3 207 73.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 3.0e-85 318.9 216 71.8
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.9e-85 318.5 215 73.5
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 8.6e-85 317.4 216 74.5
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.5e-84 316.6 216 72.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.5e-84 316.6 201 79.1
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.5e-84 316.6 217 72.4
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.3e-84 315.1 218 72.5
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 9.5e-84 313.9 218 72.5
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 9.5e-84 313.9 216 71.8
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.2e-83 313.5 216 71.3
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.2e-83 313.5 216 71.3
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 2.8e-83 312.4 217 71.9
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.8e-83 312.4 220 71.8
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.4e-82 310.1 210 72.9
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.4e-82 310.1 216 71.8
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.3e-82 309.3 220 73.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.1e-82 308.9 216 71.3
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 4.0e-82 308.5 216 72.2
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 4.0e-82 308.5 218 72.5
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.8e-82 307.8 251 63.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 2.6e-81 305.8 217 70.0
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 5.8e-81 304.7 216 71.3
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 5.8e-81 304.7 217 70.0
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 5.8e-81 304.7 217 69.1
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 7.5e-81 304.3 216 69.4
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 9.8e-81 303.9 217 69.1
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 9.8e-81 303.9 217 69.1
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 9.8e-81 303.9 221 70.1
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 9.8e-81 303.9 218 71.1
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.7e-80 303.1 221 68.8
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.7e-80 303.1 218 68.3
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.2e-80 302.8 216 69.0
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 2.2e-80 302.8 217 70.0
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 4.9e-80 301.6 219 68.5
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 6.4e-80 301.2 216 69.0
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 8.3e-80 300.8 221 69.2
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 8.3e-80 300.8 206 71.4
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.1e-79 300.4 216 68.5
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.9e-79 299.7 207 71.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.4e-79 299.3 217 68.7
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-79 298.9 224 67.4
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 5.4e-79 298.1 216 66.7
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 9.2e-79 297.4 216 69.9
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 9.2e-79 297.4 216 67.1
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.2e-78 297.0 226 66.4
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.6e-78 296.6 217 67.7
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.6e-78 296.6 216 68.1
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 2.7e-78 295.8 216 65.3
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 3.5e-78 295.4 216 67.1
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 3.5e-78 295.4 204 70.1
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 4.6e-78 295.0 214 68.2
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 4.6e-78 295.0 216 65.7
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.0e-77 293.9 218 64.7
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.7e-77 293.1 216 68.1
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.3e-77 292.7 226 65.5
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.0e-77 292.4 226 63.3
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 5.0e-77 291.6 223 64.1
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.0e-77 291.6 215 69.3
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 1.9e-76 289.7 226 62.4
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 4.3e-76 288.5 201 71.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 5.6e-76 288.1 223 63.7
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 7.3e-76 287.7 222 63.1
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 9.5e-76 287.3 203 68.0
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.2e-75 287.0 223 63.2
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.2e-75 287.0 223 63.2
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.2e-75 287.0 222 63.1
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.2e-75 287.0 222 63.1
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.2e-75 287.0 223 63.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.6e-75 286.6 206 68.9
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.4e-74 283.5 185 74.1
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.8e-74 283.1 214 67.8
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 4.0e-74 282.0 184 72.8
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 6.8e-74 281.2 222 63.1
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 6.8e-74 281.2 181 75.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 6.8e-74 281.2 216 63.9
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 2.0e-73 279.6 209 66.5
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.6e-73 279.3 222 65.3
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.6e-73 279.3 224 62.1
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.9e-71 273.1 193 68.4
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 4.1e-71 271.9 182 73.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.1e-71 271.9 188 69.7
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.4e-71 271.6 221 63.8
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.6e-70 270.0 211 60.2
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.7e-70 269.2 221 61.1
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 6.0e-70 268.1 221 62.9
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.3e-69 266.9 217 61.8
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.0e-69 265.8 171 73.1
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 6.6e-69 264.6 221 60.2
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.5e-68 262.7 220 57.3
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-68 261.9 172 72.1
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.6e-67 260.0 215 62.3
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 8.1e-67 257.7 216 59.7
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.3e-66 256.1 217 64.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.8e-66 254.6 254 55.5
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.8e-66 254.6 254 55.5
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.6e-60 235.0 184 65.2
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.2e-59 233.8 144 77.1
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.1e-59 233.0 146 75.3
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 8.9e-58 227.6 145 73.8
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 3.8e-56 222.2 195 59.5
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 9.6e-52 207.6 220 46.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 2.1e-51 206.5 158 62.7
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 6.2e-51 204.9 141 68.1
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.8e-50 203.4 197 48.7
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 9.0e-50 201.1 152 69.7
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.0e-49 199.9 140 68.6
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 3.8e-48 195.7 146 66.4
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.0e-45 187.6 163 52.8
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.1e-43 179.9 126 70.6
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.5e-41 173.7 143 55.9
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.2e-40 169.9 188 43.6
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.1e-39 167.5 125 66.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 1.2e-38 164.1 149 47.7
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 2.1e-38 163.3 177 44.6
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 3.9e-37 159.1 106 71.7
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.5e-36 157.1 206 45.1
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 3.3e-36 156.0 155 46.5
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 4.3e-36 155.6 205 41.0
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.5e-31 139.8 177 39.0
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.6e-27 127.1 92 68.5
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 9.3e-23 111.3 76 67.1
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.6e-22 110.5 75 64.0
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 6.7e-21 105.1 159 35.2
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.0e-16 91.3 65 67.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 3.8e-16 89.4 75 57.3
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 5.0e-16 89.0 49 79.6
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.4e-15 87.4 49 79.6
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 2.5e-15 86.7 49 81.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.6e-14 84.0 69 56.5
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 6.1e-14 82.0 56 62.5
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.0e-13 81.3 76 56.6
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 1.8e-10 70.5 38 84.2
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.8e-10 70.5 41 78.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 6.9e-10 68.6 63 50.8
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 5.9e-09 65.5 55 60.0
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 1.3e-08 64.3 91 36.3
Gohir.A12G080400 Gossypium hirsutum HOM05D000285 ORTHO05D000241 1.2e-06 57.8 99 32.3
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.6e-06 57.4 89 30.3
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 1.6e-06 57.4 44 61.4
vmacro02513 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 2.1e-06 57.0 74 37.8
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 2.7e-06 56.6 74 36.5
FAN09G0313 Fragaria x ananassa HOM05D001873 ORTHO05D001976 2.7e-06 56.6 94 29.8
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 2.7e-06 56.6 66 39.4
MBI04_g38565_MAGBIO Magnolia biondii HOM05D001543 ORTHO05D001722 2.7e-06 56.6 103 33.0
Rhsim03G0179900 Rhododendron simsii HOM05D003145 ORTHO05D003586 2.7e-06 56.6 81 34.6
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 4.7e-06 55.8 59 40.7
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.7e-06 55.8 89 30.3
CiPaw.14G099700 Carya illinoinensis HOM05D001873 ORTHO05D001976 4.7e-06 55.8 102 28.4
unitig_61.g26147 Utricularia gibba HOM05D001495 ORTHO05D001391 4.7e-06 55.8 74 37.8
Actinidia34105 Actinidia chinensis HOM05D003145 ORTHO05D003586 6.1e-06 55.5 96 31.2
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.1e-06 55.5 89 29.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.1e-06 55.5 89 29.2
Dinv24173 Davidia involucrata HOM05D001543 ORTHO05D001722 6.1e-06 55.5 74 36.5
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 6.1e-06 55.5 74 36.5
Nitab4.5_0004242g0030 Nicotiana tabacum HOM05D003938 ORTHO05D004759 6.1e-06 55.5 85 31.8
Ah.14g089330 Amaranthus hybridus HOM05D001563 ORTHO05D001956 7.9e-06 55.1 73 31.5
FAN02G0207 Fragaria x ananassa HOM05D001873 ORTHO05D001976 7.9e-06 55.1 94 29.8
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 7.9e-06 55.1 33 72.7


User provided reference genes

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