Gene: Lsat_1_v5_gn_2_86220

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_2_86220
  • Transcript Identifier Lsat_1_v5_gn_2_86220.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_2 : 164956398-164963181 : negative

Gene Family Information

  • ID HOM05D004585
  • #Genes/#Species 158/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_2_86220.v5
  • pacid 38956707

Descriptions

  • Description PF00004//PF00076 - ATPase family associated with various cellular activities (AAA) (AAA) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G04600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR003593 AAA+ ATPase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR003959 ATPase, AAA-type, core
IPR041569 AAA ATPase, AAA+ lid domain
Mapman id Description
17.1.2.2.1.7 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.assembly factor (NOP15)
23.1.3.4.1.2 Protein translocation.chloroplast.inner envelope TIC translocation system.AAA-ATPase motor complex.FtsH12-FtsHi subcomplex.component FtsHi