Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 2.8e-103 379.0 249 100.0
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 1.1e-96 357.1 249 87.6
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 1.5e-96 356.7 249 84.7
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 4.0e-78 295.4 233 76.4
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 4.2e-67 258.8 254 64.2
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 2.1e-63 246.5 259 62.2
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 8.1e-63 244.6 245 60.4
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.6e-61 238.0 250 54.0
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 1.3e-60 237.3 252 59.5
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 8.4e-60 234.6 257 59.5
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 2.4e-59 233.0 275 53.8
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.6e-58 228.8 252 54.4
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 4.6e-58 228.8 253 57.7
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 6.0e-58 228.4 253 54.5
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.3e-57 227.3 248 58.1
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.8e-57 226.9 243 58.0
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 2.3e-57 226.5 250 56.4
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 3.0e-57 226.1 251 57.4
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 6.7e-57 224.9 252 58.7
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.7e-57 224.6 252 54.0
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 2.5e-56 223.0 251 54.6
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 4.3e-56 222.2 257 57.2
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 9.6e-56 221.1 245 54.7
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.6e-56 221.1 246 55.7
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 9.6e-56 221.1 252 49.2
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-55 220.7 246 55.3
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 1.3e-55 220.7 251 57.4
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 1.3e-55 220.7 243 58.0
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 1.6e-55 220.3 249 56.2
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 1.6e-55 220.3 251 52.6
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.8e-55 219.5 246 55.7
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 4.8e-55 218.8 250 54.8
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 4.8e-55 218.8 249 56.6
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 6.2e-55 218.4 250 53.6
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 6.2e-55 218.4 245 54.3
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 8.1e-55 218.0 240 66.7
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 8.1e-55 218.0 251 48.6
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 1.1e-54 217.6 251 52.6
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.1e-54 217.6 254 53.9
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 1.1e-54 217.6 249 54.2
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 2.4e-54 216.5 250 54.0
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 2.4e-54 216.5 252 56.3
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.4e-54 216.5 248 53.6
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 3.1e-54 216.1 252 56.3
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 5.3e-54 215.3 251 53.8
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 6.9e-54 214.9 250 53.6
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 2.6e-53 213.0 249 53.0
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 3.4e-53 212.6 251 55.8
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 4.5e-53 212.2 248 55.6
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 4.5e-53 212.2 250 54.4
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.7e-52 210.3 261 53.3
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.7e-52 210.3 261 53.3
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 2.2e-52 209.9 250 54.8
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 3.8e-52 209.1 247 53.0
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 4.9e-52 208.8 251 53.0
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 4.9e-52 208.8 250 53.2
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 8.4e-52 208.0 249 55.4
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 8.4e-52 208.0 249 55.0
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.1e-51 207.6 251 53.4
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.9e-51 206.8 251 52.6
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.9e-51 206.8 251 52.6
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 2.4e-51 206.5 251 53.0
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 3.2e-51 206.1 248 52.8
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 5.5e-51 205.3 281 48.0
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 7.1e-51 204.9 251 53.4
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 7.1e-51 204.9 246 55.3
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 7.1e-51 204.9 250 52.4
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 9.3e-51 204.5 243 51.4
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 9.3e-51 204.5 250 54.8
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 1.6e-50 203.8 259 52.1
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.6e-50 203.8 244 49.6
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.6e-50 203.8 251 53.4
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.7e-50 203.0 250 53.2
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 6.0e-50 201.8 249 52.6
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 7.9e-50 201.4 248 51.6
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.9e-50 201.4 182 64.3
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.0e-49 201.1 248 51.6
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.0e-49 201.1 214 61.2
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 1.8e-49 200.3 251 50.6
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 5.1e-49 198.7 252 55.2
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.5e-48 197.2 181 61.9
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.6e-47 193.7 243 47.7
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 1.8e-46 190.3 249 49.8
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 4.0e-46 189.1 256 47.3
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 5.3e-46 188.7 252 54.8
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.2e-45 187.6 235 53.2
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 2.6e-45 186.4 244 52.5
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.1e-43 181.0 183 59.6
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 7.4e-40 168.3 220 50.0
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-39 167.5 155 61.9
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 3.7e-39 166.0 248 42.3
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 4.8e-39 165.6 247 47.8
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 6.3e-39 165.2 249 50.6
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.1e-38 162.5 230 43.5
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 6.9e-38 161.8 259 42.1
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 2.5e-35 153.3 242 45.5
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.6e-34 150.6 184 46.2
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 3.6e-34 149.4 185 47.6
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.9e-34 148.3 151 53.6
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 7.9e-34 148.3 248 38.3
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 5.1e-33 145.6 198 44.9
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 8.8e-33 144.8 184 48.4
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-31 140.6 161 55.3
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 5.3e-30 135.6 274 39.1
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 6.9e-30 135.2 262 34.0
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.1e-25 119.0 97 63.9
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 5.1e-25 119.0 97 63.9
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 8.8e-25 118.2 153 45.1
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 9.7e-24 114.8 250 34.0
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 7.0e-22 108.6 162 43.2
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 8.0e-18 95.1 84 60.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 1.3e-15 87.8 255 27.5
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.7e-15 87.4 182 38.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.6e-13 80.1 233 32.2
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 1.3e-12 77.8 57 66.7
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 2.2e-12 77.0 156 39.7
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 2.7e-10 70.1 45 66.7
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 2.0e-08 63.9 99 41.4
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 6.3e-07 58.9 84 40.5
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 2.4e-06 57.0 81 44.4
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.4e-06 57.0 59 44.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 2.4e-06 57.0 58 48.3
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 3.1e-06 56.6 59 44.1
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 3.1e-06 56.6 57 47.4
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 4.1e-06 56.2 59 42.4
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 47.5
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 42.4
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 42.4
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 7.0e-06 55.5 59 44.1
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 7.0e-06 55.5 59 44.1
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 7.0e-06 55.5 59 44.1
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 9.1e-06 55.1 59 47.5
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 9.1e-06 55.1 59 47.5
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 9.1e-06 55.1 59 47.5
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 9.1e-06 55.1 58 44.8
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 9.1e-06 55.1 59 44.1


User provided reference genes

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