Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024980 Solanum pennellii HOM05D011511 ORTHO05D000022 2.8e-128 461.8 215 100.0
PGSC0003DMG400029986 Solanum tuberosum HOM05D011511 ORTHO05D000022 1.5e-68 263.5 141 90.1
Nitab4.5_0000512g0090 Nicotiana tabacum HOM05D011511 ORTHO05D000022 1.3e-53 213.8 200 52.0
Nitab4.5_0005029g0020 Nicotiana tabacum HOM05D011511 ORTHO05D000022 7.5e-41 171.4 216 40.7
Sopen07g021380 Solanum pennellii HOM05D000155 ORTHO05D000034 5.4e-31 138.7 144 49.3
Nitab4.5_0008964g0030 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.1e-30 136.7 120 58.3
Nitab4.5_0003663g0030 Nicotiana tabacum HOM05D011511 ORTHO05D000022 7.3e-28 128.3 106 54.7
Sopen11g008140 Solanum pennellii HOM05D000024 ORTHO05D000022 7.3e-28 128.3 213 34.7
Nitab4.5_0008471g0050 Nicotiana tabacum HOM05D011511 ORTHO05D000022 9.6e-28 127.9 135 51.1
PGSC0003DMG400046872 Solanum tuberosum HOM05D000003 ORTHO05D000022 6.2e-27 125.2 216 33.8
Sopen00g003390 Solanum pennellii HOM05D000003 ORTHO05D000004 1.4e-26 124.0 215 33.0
PGSC0003DMG400045895 Solanum tuberosum HOM05D000155 ORTHO05D000022 5.2e-26 122.1 216 31.0
PGSC0003DMG400040103 Solanum tuberosum HOM05D000003 ORTHO05D000022 1.2e-25 120.9 220 34.1
Sopen11g015660 Solanum pennellii HOM05D000003 ORTHO05D023159 5.8e-25 118.6 214 32.7
PGSC0003DMG400035850 Solanum tuberosum HOM05D000003 ORTHO05D000022 5.8e-25 118.6 163 38.7
Cc00_g20180 Coffea canephora HOM05D000155 ORTHO05D000022 7.6e-25 118.2 216 31.5
Sopen08g015240 Solanum pennellii HOM05D000003 ORTHO05D000004 9.9e-25 117.9 218 33.9
Sopen04g007290 Solanum pennellii HOM05D000003 ORTHO05D000006 3.8e-24 115.9 88 52.3
Sopen08g015180 Solanum pennellii HOM05D000003 ORTHO05D000004 1.4e-23 114.0 213 33.3
PGSC0003DMG400035792 Solanum tuberosum HOM05D000155 ORTHO05D000022 3.2e-23 112.8 177 32.2
Sopen09g009790 Solanum pennellii HOM05D000155 ORTHO05D000022 1.2e-22 110.9 210 29.5
Sopen04g014310 Solanum pennellii HOM05D000155 ORTHO05D000022 1.3e-21 107.5 212 31.1
Sopen00g003380 Solanum pennellii HOM05D000155 ORTHO05D000022 1.7e-21 107.1 212 28.8
Sopen00g003540 Solanum pennellii HOM05D000003 ORTHO05D000004 1.7e-21 107.1 212 28.8
Sopen09g015010 Solanum pennellii HOM05D000003 ORTHO05D000022 1.7e-21 107.1 217 29.5
Sopen02g039300 Solanum pennellii HOM05D000003 ORTHO05D000004 3.0e-21 106.3 179 34.1
Cc00_g03270 Coffea canephora HOM05D000155 ORTHO05D000022 6.6e-21 105.1 175 36.0
PGSC0003DMG400021434 Solanum tuberosum HOM05D001426 ORTHO05D000022 6.6e-21 105.1 207 30.0
PGSC0003DMG402031434 Solanum tuberosum HOM05D000003 ORTHO05D000004 6.6e-21 105.1 170 32.9
Cc11_g02100 Coffea canephora HOM05D000003 ORTHO05D000022 1.9e-20 103.6 173 31.8
Sopen09g012310 Solanum pennellii HOM05D000003 ORTHO05D000004 1.9e-20 103.6 218 31.7
Sopen01g026920 Solanum pennellii HOM05D000003 ORTHO05D000022 3.3e-20 102.8 214 30.4
PGSC0003DMG400015911 Solanum tuberosum HOM05D000003 ORTHO05D001389 5.6e-20 102.1 208 29.3
Sopen11g008100 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-19 100.9 213 29.1
PGSC0003DMG400008628 Solanum tuberosum HOM05D000155 ORTHO05D000022 2.8e-19 99.8 186 33.3
Cc00_g07050 Coffea canephora HOM05D000003 ORTHO05D000004 6.2e-19 98.6 173 35.3
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 8.1e-19 98.2 144 41.0
Sopen11g008050 Solanum pennellii HOM05D000155 ORTHO05D000022 8.1e-19 98.2 209 28.7
Sabra06G0000400 Salix brachista HOM05D000003 ORTHO05D000004 1.8e-18 97.1 167 32.9
Sopen07g013710 Solanum pennellii HOM05D000003 ORTHO05D000004 1.8e-18 97.1 136 36.8
Sopen00g001090 Solanum pennellii HOM05D000003 ORTHO05D000004 5.3e-18 95.5 189 32.8
Thecc.03G325600 Theobroma cacao HOM05D000003 ORTHO05D000006 5.3e-18 95.5 159 34.0
PGSC0003DMG401009742 Solanum tuberosum HOM05D001426 ORTHO05D001389 6.9e-18 95.1 178 32.0
Peaxi162Scf53938g00004 Petunia axillaris HOM05D001426 ORTHO05D001389 9.0e-18 94.7 178 33.7
Sabra01G0000100 Salix brachista HOM05D000003 ORTHO05D000004 3.4e-17 92.8 168 32.7
Thecc.04G000100 Theobroma cacao HOM05D000024 ORTHO05D000006 3.4e-17 92.8 155 31.0
Nitab4.5_0000459g0130 Nicotiana tabacum HOM05D011511 ORTHO05D000022 9.9e-17 91.3 131 38.9
Nitab4.5_0006480g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 9.9e-17 91.3 171 35.1
Sopen00g012040 Solanum pennellii HOM05D000003 ORTHO05D000004 9.9e-17 91.3 178 32.0
Sopen06g007150 Solanum pennellii HOM05D000003 ORTHO05D000004 9.9e-17 91.3 198 29.3
Cc03_g15170 Coffea canephora HOM05D000025 ORTHO05D000022 1.7e-16 90.5 209 27.3
Nitab4.5_0005934g0070 Nicotiana tabacum HOM05D011511 ORTHO05D000022 3.8e-16 89.4 62 58.1
Sopen03g008140 Solanum pennellii HOM05D000014 ORTHO05D000016 3.8e-16 89.4 195 30.3
Thecc.02G366600 Theobroma cacao HOM05D000003 ORTHO05D000006 3.8e-16 89.4 150 32.7
Sopen08g024310 Solanum pennellii HOM05D000003 ORTHO05D000006 1.9e-15 87.0 136 34.6
PGSC0003DMG400040069 Solanum tuberosum HOM05D000155 ORTHO05D000022 2.1e-14 83.6 165 32.7
Nitab4.5_0010722g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000022 2.7e-14 83.2 213 28.6
Thecc.04G000200 Theobroma cacao HOM05D000155 ORTHO05D000022 3.5e-14 82.8 167 31.7
Peaxi162Scf00024g02012 Petunia axillaris HOM05D000155 ORTHO05D000022 4.6e-14 82.4 116 38.8
CiPaw.15G160400 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.9e-13 79.3 164 28.0
RcHm_v2.0_Chr6g0301391 Rosa chinensis HOM05D000003 ORTHO05D000004 3.9e-13 79.3 178 32.0
CAN.G520.11 Capsicum annuum HOM05D000741 ORTHO05D000506 1.5e-12 77.4 85 37.6
Nitab4.5_0000417g0090 Nicotiana tabacum HOM05D009916 ORTHO05D000022 3.3e-12 76.3 190 28.4
PGSC0003DMG400037811 Solanum tuberosum HOM05D000155 ORTHO05D000022 3.3e-12 76.3 140 32.9
MBI02_g40095_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 9.6e-12 74.7 121 38.8
MBI16_g06664_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000022 1.3e-11 74.3 207 27.1
Sabra11G0000200 Salix brachista HOM05D000155 ORTHO05D000022 1.3e-11 74.3 134 31.3
CAN.G1135.5 Capsicum annuum HOM05D011511 ORTHO05D000022 2.1e-11 73.6 121 31.4
RcHm_v2.0_Chr4g0404571 Rosa chinensis HOM05D000003 ORTHO05D000004 2.8e-11 73.2 188 31.4
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 4.8e-11 72.4 233 26.6
Nitab4.5_0000754g0070 Nicotiana tabacum HOM05D009916 ORTHO05D000022 4.8e-11 72.4 107 37.4
Peaxi162Scf00188g00934 Petunia axillaris HOM05D000155 ORTHO05D000022 4.8e-11 72.4 148 28.4
FvH4_3g24611 Fragaria vesca HOM05D000003 ORTHO05D000004 6.2e-11 72.0 180 30.0
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 2.4e-10 70.1 172 29.7
Oeu052667.1 Olea europaea HOM05D000024 ORTHO05D000006 2.4e-10 70.1 188 29.8
Nitab4.5_0001771g0080 Nicotiana tabacum HOM05D001426 ORTHO05D001389 3.1e-10 69.7 165 27.9
Nitab4.5_0007662g0020 Nicotiana tabacum HOM05D000801 ORTHO05D001389 3.1e-10 69.7 138 31.9
MBI01_g02758_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 5.3e-10 68.9 159 30.2
MBI18_g33703_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.0e-10 68.2 159 29.6
Nitab4.5_0000249g0360 Nicotiana tabacum HOM05D009916 ORTHO05D000022 1.2e-09 67.8 151 29.8
Nitab4.5_0000335g0260 Nicotiana tabacum HOM05D000003 ORTHO05D000004 1.2e-09 67.8 100 30.0
PSO017G0119 Papaver somniferum HOM05D000003 ORTHO05D006738 1.2e-09 67.8 175 30.9
Sopen02g008700 Solanum pennellii HOM05D000003 ORTHO05D000022 1.2e-09 67.8 225 25.8
Nitab4.5_0000320g0030 Nicotiana tabacum HOM05D000155 ORTHO05D000022 1.5e-09 67.4 154 30.5
PGSC0003DMG400043208 Solanum tuberosum HOM05D000003 ORTHO05D000022 2.6e-09 66.6 91 33.0
Sopen06g003730 Solanum pennellii HOM05D000155 ORTHO05D000022 3.4e-09 66.2 217 24.4
Nitab4.5_0000654g0140 Nicotiana tabacum HOM05D000155 ORTHO05D000022 4.5e-09 65.9 83 36.1
Nitab4.5_0004849g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 5.8e-09 65.5 62 48.4
Nitab4.5_0000031g0460 Nicotiana tabacum HOM05D009916 ORTHO05D000022 7.6e-09 65.1 96 36.5
Glyma.06G010150 Glycine max HOM05D000003 ORTHO05D000004 1.3e-08 64.3 175 28.0
MBI10_g04436_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-08 64.3 127 31.5
PGSC0003DMG402018748 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.3e-08 64.3 113 31.0
ECA240G2728 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-08 63.9 176 27.3
Nitab4.5_0000251g0030 Nicotiana tabacum HOM05D001426 ORTHO05D001389 2.2e-08 63.5 147 27.9
Sopen11g008090 Solanum pennellii HOM05D000024 ORTHO05D000006 2.2e-08 63.5 109 31.2
Nitab4.5_0005970g0030 Nicotiana tabacum HOM05D000032 ORTHO05D006669 4.9e-08 62.4 97 35.1
Sopen05g017710 Solanum pennellii HOM05D000003 ORTHO05D000004 6.4e-08 62.0 74 36.5
FvH4_5g21911 Fragaria vesca HOM05D000003 ORTHO05D000022 8.4e-08 61.6 148 30.4
MBI14_g12128_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-08 61.6 214 24.3
RcHm_v2.0_Chr7g0200601 Rosa chinensis HOM05D000003 ORTHO05D000651 1.1e-07 61.2 164 31.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.8 174 29.3
Sopen03g025440 Solanum pennellii HOM05D000024 ORTHO05D000022 1.4e-07 60.8 67 38.8
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.9e-07 60.5 160 31.2
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.9e-07 60.5 160 31.2
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 1.9e-07 60.5 164 31.1
Sabra07G0094000 Salix brachista HOM05D000003 ORTHO05D000283 1.9e-07 60.5 180 28.9
CAN.G2076.4 Capsicum annuum HOM05D000295 ORTHO05D006296 2.4e-07 60.1 112 33.0
SGA_v2.0_scaffold61G21206 Striga asiatica HOM05D000003 ORTHO05D000006 2.4e-07 60.1 134 32.8
TAR400G0001 Trochodendron aralioides HOM05D000155 ORTHO05D000022 2.4e-07 60.1 129 27.1
MBI15_g37533_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000022 3.2e-07 59.7 163 27.0
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 3.2e-07 59.7 188 28.7
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 4.2e-07 59.3 176 29.5
PGSC0003DMG400007590 Solanum tuberosum HOM05D001426 ORTHO05D001389 4.2e-07 59.3 117 31.6
Nitab4.5_0010696g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 7.1e-07 58.5 70 47.1
PGSC0003DMG400033664 Solanum tuberosum HOM05D001426 ORTHO05D001389 9.3e-07 58.2 122 30.3
Nitab4.5_0006265g0080 Nicotiana tabacum HOM05D000024 ORTHO05D000006 1.2e-06 57.8 90 27.8
PSO675G0391 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-06 57.8 162 26.5
PSO675G6925 Papaver somniferum HOM05D000003 ORTHO05D000651 1.2e-06 57.8 162 26.5
Sopen08g015270 Solanum pennellii HOM05D000003 ORTHO05D009932 1.2e-06 57.8 78 34.6
PGSC0003DMG400002381 Solanum tuberosum HOM05D000003 ORTHO05D006296 1.2e-06 57.8 74 29.7
SGA_v2.0_scaffold32G13212 Striga asiatica HOM05D044428 ORTHO05D000022 1.6e-06 57.4 153 31.4
Nitab4.5_0000239g0020 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.7e-06 56.6 112 25.9
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 2.7e-06 56.6 161 31.1
MBI01_g02771_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.5e-06 56.2 96 33.3
Nitab4.5_0000681g0110 Nicotiana tabacum HOM05D065652 ORTHO05D001389 4.6e-06 55.8 61 42.6
CAN.G426.23 Capsicum annuum HOM05D011511 ORTHO05D000022 6.0e-06 55.5 83 30.1
FvH4_6g19462 Fragaria vesca HOM05D000003 ORTHO05D000022 6.0e-06 55.5 149 28.2
Nitab4.5_0001027g0140 Nicotiana tabacum HOM05D001426 ORTHO05D000022 6.0e-06 55.5 90 33.3
Nitab4.5_0005232g0010 Nicotiana tabacum HOM05D009916 ORTHO05D014164 6.0e-06 55.5 105 29.5
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-06 55.5 163 33.1
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 7.9e-06 55.1 147 27.9
Aqoxy7G02314 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.9e-06 55.1 172 23.3
PGSC0003DMG400010787 Solanum tuberosum HOM05D000155 ORTHO05D000022 7.9e-06 55.1 149 30.2


User provided reference genes

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