Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 0.0e+00 1200.3 665 100.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 0.0e+00 1182.2 665 98.3
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 0.0e+00 1094.7 655 91.3
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 0.0e+00 1088.9 655 90.4
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 0.0e+00 1083.6 665 89.9
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.7e-291 1005.0 665 84.4
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 5.0e-269 931.0 654 77.5
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 9.8e-265 916.8 630 78.3
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-264 916.4 629 77.4
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.7e-264 916.0 666 75.1
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 3.2e-263 911.8 681 72.8
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-259 899.8 645 78.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 6.4e-256 887.5 648 74.1
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.3e-253 879.8 644 73.0
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.6e-253 877.5 637 74.6
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.2e-250 867.8 651 74.0
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 8.9e-250 867.1 648 72.1
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 8.9e-250 867.1 646 74.6
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.2e-247 858.6 656 72.1
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 7.1e-247 857.4 667 71.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 5.1e-245 851.3 637 73.0
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 8.6e-245 850.5 667 69.9
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 4.3e-244 848.2 605 77.0
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 7.3e-244 847.4 634 72.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 9.5e-244 847.0 633 72.7
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-243 846.7 474 95.8
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-243 846.3 636 72.2
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 4.7e-243 844.7 645 71.2
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.4e-242 843.2 740 65.3
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.4e-242 843.2 636 72.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 3.1e-242 842.0 625 72.6
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.2e-241 840.1 621 72.8
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.4e-239 832.4 625 71.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.8e-238 827.4 637 71.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 8.7e-237 823.9 660 69.2
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.5e-236 822.4 624 70.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.6e-236 821.2 635 71.5
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.2e-235 820.1 624 71.5
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.2e-235 820.1 625 71.5
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.7e-235 818.1 655 67.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 6.2e-235 817.8 631 70.7
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.1e-234 817.0 651 68.5
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.2e-233 813.5 660 69.8
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.4e-233 812.0 634 70.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 3.4e-233 812.0 659 68.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 4.4e-233 811.6 626 70.3
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.8e-233 811.2 667 69.4
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 9.9e-233 810.4 631 71.3
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.3e-232 810.1 667 68.2
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.9e-232 808.9 667 69.1
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.9e-232 808.1 668 69.5
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.9e-231 806.2 638 71.0
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.4e-231 805.8 665 69.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.7e-230 802.4 635 70.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-229 799.3 649 68.7
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.1e-228 797.0 657 68.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 3.3e-228 795.4 620 72.1
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 7.3e-228 794.3 613 69.5
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.3e-227 793.5 655 67.2
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.8e-227 792.3 657 66.5
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.1e-226 790.4 642 68.7
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-226 790.4 628 72.3
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-226 790.0 658 66.9
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.4e-226 789.3 667 66.6
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.4e-226 789.3 646 67.5
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.4e-226 789.3 646 67.5
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.4e-226 789.3 646 67.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 6.9e-226 787.7 641 69.1
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 9.0e-226 787.3 661 67.2
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 9.0e-226 787.3 662 66.8
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.5e-225 786.6 686 65.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.5e-225 786.6 664 66.3
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 5.8e-225 784.6 642 68.4
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 7.6e-225 784.3 625 69.1
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 9.9e-225 783.9 662 66.9
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.8e-224 781.9 637 67.8
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.9e-223 779.6 672 65.2
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-222 776.9 658 66.7
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.2e-222 776.9 657 66.5
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.1e-222 776.2 527 76.9
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.6e-222 775.0 655 67.3
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 4.6e-222 775.0 661 65.5
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.3e-221 773.5 661 66.4
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 5.1e-221 771.5 661 66.1
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-219 766.9 661 66.9
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.6e-219 766.5 665 66.0
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.4e-218 762.7 671 63.3
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.1e-218 762.3 646 66.3
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 6.9e-218 761.1 637 66.9
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.2e-217 760.4 661 65.5
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.2e-217 760.4 713 62.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-217 760.0 646 66.6
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 3.2e-215 752.3 671 64.1
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 2.1e-214 749.6 659 64.6
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 4.6e-214 748.4 660 64.2
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.9e-214 747.7 660 64.2
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-213 746.9 660 63.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.3e-213 746.9 659 64.3
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.8e-211 738.4 640 64.8
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.1e-210 735.7 660 63.5
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.5e-209 733.4 563 72.5
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.2e-207 725.3 664 61.6
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 7.4e-204 714.5 605 67.1
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.9e-202 708.0 669 62.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.0e-201 706.4 637 63.6
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 5.5e-199 698.4 538 68.8
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.3e-196 689.1 648 59.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.2e-195 684.5 620 60.6
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 5.3e-194 681.8 647 60.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.1e-191 674.1 560 65.4
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 3.9e-189 665.6 506 72.5
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 3.7e-187 659.1 545 67.7
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.6e-185 652.9 665 56.4
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.2e-184 649.8 511 69.5
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-178 630.6 658 57.3
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.2e-177 627.5 521 67.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.8e-168 595.9 643 55.1
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 3.8e-160 569.3 636 54.6
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-155 553.9 410 72.9
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-148 531.2 451 67.8
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-146 524.6 454 63.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 4.1e-146 522.7 634 47.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-145 521.2 444 67.8
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.2e-145 521.2 529 55.2
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.9e-143 513.8 662 49.5
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 4.0e-141 506.1 470 58.5
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 8.9e-141 505.0 654 45.0
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 8.1e-126 455.3 412 62.1
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-118 430.6 329 68.7
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 4.0e-117 426.4 672 43.3
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.5e-116 424.5 592 43.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-114 417.9 631 45.2
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.4e-108 396.7 337 68.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 5.7e-87 326.2 351 54.4
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.8e-85 321.2 320 61.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.0e-80 305.4 180 88.9
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.0e-79 301.2 223 77.6
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.6e-76 290.8 178 89.3
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 9.4e-74 282.3 178 87.1
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.6e-73 280.4 213 70.9
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.0e-72 278.9 648 35.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.0e-71 274.6 224 62.9
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.9e-67 260.8 232 63.4
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.5e-66 257.7 168 89.3
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 3.3e-63 247.3 210 64.3
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.7e-62 243.8 174 79.3
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.7e-59 235.0 739 31.0
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.6e-55 221.1 169 69.8
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 4.4e-55 220.3 180 72.2
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 1.6e-49 201.8 155 69.0
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 4.7e-49 200.3 155 69.0
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.8e-48 196.4 149 77.2
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.7e-46 191.8 670 30.3
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.8e-43 180.6 128 74.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 6.8e-40 169.9 117 76.9
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.6e-36 158.7 92 91.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-33 149.1 136 64.0
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-32 143.3 92 84.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-32 143.3 92 84.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-32 143.3 92 84.8
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 6.0e-28 130.2 187 42.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.7e-27 128.6 99 66.7
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 5.0e-27 127.1 112 61.6
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.0e-24 117.5 119 61.3
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.4e-22 110.2 94 60.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.2e-21 106.3 95 57.9
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-20 105.9 58 96.6
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 7.8e-20 103.2 98 57.1
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.6e-19 100.1 95 57.9
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 8.6e-19 99.8 111 64.9
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-17 95.9 55 89.1
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 6.2e-17 93.6 75 68.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 9.9e-15 86.3 93 50.5
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 3.7e-14 84.3 75 61.3
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.2e-12 79.3 82 50.0
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 3.5e-12 77.8 48 87.5
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.6e-12 77.4 85 48.2
Sopen01g018800 Solanum pennellii HOM05D003777 ORTHO05D393350 3.3e-10 71.2 142 40.1
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.3e-10 70.1 639 21.8
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.1e-08 66.2 105 42.9
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 8.9e-08 63.2 135 38.5


User provided reference genes

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