Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 1.3e-169 599.7 331 100.0
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.2e-156 555.8 331 92.4
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 2.0e-149 532.7 331 86.1
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 4.9e-148 528.1 331 87.9
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 2.0e-141 506.1 271 97.8
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 3.7e-87 325.9 330 57.9
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 4.1e-86 322.4 330 58.2
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.4e-85 319.3 330 58.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.8e-79 299.7 331 56.8
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.8e-78 297.0 328 54.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 3.1e-78 296.2 361 54.3
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 7.0e-78 295.0 336 53.0
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.1e-75 287.7 329 54.4
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.5e-75 287.3 330 54.2
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.5e-75 287.3 332 56.3
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.1e-74 283.5 330 52.4
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.0e-73 281.2 331 52.6
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.3e-73 280.0 331 55.6
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 5.2e-73 278.9 332 51.5
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 8.8e-73 278.1 331 54.7
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-72 277.7 331 54.7
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.1e-72 277.7 330 53.9
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.5e-72 277.3 333 53.5
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.7e-71 273.9 330 51.8
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 2.2e-71 273.5 330 53.6
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.8e-71 273.1 343 53.4
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 3.7e-71 272.7 329 51.4
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 3.7e-71 272.7 331 51.4
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.7e-71 272.7 399 47.4
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 4.8e-71 272.3 343 53.6
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 8.2e-71 271.6 332 54.5
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 8.2e-71 271.6 331 51.4
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 4.1e-70 269.2 330 51.8
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 5.3e-70 268.9 344 51.2
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 9.1e-70 268.1 331 51.4
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 9.1e-70 268.1 380 47.4
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.2e-69 267.7 332 50.6
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.6e-69 267.3 309 53.7
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 5.9e-69 265.4 329 52.3
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 6.5e-68 261.9 348 50.3
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 8.5e-68 261.5 335 50.4
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 8.5e-68 261.5 307 51.8
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 2.5e-67 260.0 336 53.0
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 3.6e-66 256.1 331 49.5
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 8.0e-66 255.0 332 54.2
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.4e-65 254.2 376 45.2
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.8e-65 253.8 332 49.1
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.3e-65 253.4 335 51.9
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 6.8e-65 251.9 332 52.1
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 6.8e-65 251.9 331 53.5
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 6.8e-65 251.9 307 51.5
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 2.0e-64 250.4 334 50.3
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.4e-64 249.2 338 49.7
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 5.7e-64 248.8 333 50.2
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.7e-63 247.3 347 48.4
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 3.7e-63 246.1 330 50.0
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.3e-63 245.0 330 50.0
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 3.1e-62 243.0 358 45.0
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 2.7e-61 240.0 278 55.0
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 3.5e-61 239.6 334 49.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 5.9e-61 238.8 332 49.7
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 5.0e-60 235.7 300 51.3
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.5e-59 234.2 326 51.8
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.9e-59 233.8 334 49.7
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 2.5e-59 233.4 335 48.7
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.7e-58 229.2 298 51.7
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-57 227.3 330 47.6
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 4.0e-57 226.1 335 45.7
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.8e-57 224.9 338 46.4
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 2.6e-56 223.4 371 44.7
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 3.7e-55 219.5 359 45.1
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.7e-55 219.5 275 52.0
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 2.4e-54 216.9 329 45.9
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.5e-51 206.8 281 53.0
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.6e-50 204.1 371 41.8
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 4.7e-50 202.6 369 39.8
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 3.4e-48 196.4 229 54.1
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 2.2e-47 193.7 310 43.9
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.2e-47 193.7 294 46.9
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 3.5e-45 186.4 293 45.1
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 4.6e-45 186.0 386 38.9
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.0e-44 183.3 351 41.9
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 4.3e-43 179.5 328 40.9
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 4.0e-41 172.9 291 44.7
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 5.2e-41 172.6 377 38.7
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.0e-40 170.6 270 44.4
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 4.4e-40 169.5 336 42.9
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.3e-39 167.9 304 39.5
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 8.3e-39 165.2 181 56.4
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 4.1e-38 162.9 417 35.3
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 3.5e-37 159.8 419 34.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 7.8e-37 158.7 208 48.1
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.0e-36 158.3 270 43.7
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.0e-36 158.3 270 43.7
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.3e-36 157.9 359 36.8
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.0e-36 156.8 261 42.1
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 3.0e-36 156.8 259 40.9
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 8.6e-36 155.2 264 42.4
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 1.5e-35 154.5 261 42.5
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.5e-35 154.5 261 42.5
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.5e-35 154.5 161 62.7
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 1.2e-34 151.4 284 41.5
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.2e-34 151.4 276 41.3
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 1.6e-34 151.0 261 40.6
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 6.2e-34 149.1 285 41.1
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.4e-33 147.9 381 37.8
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.1e-33 146.7 132 62.9
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 6.8e-33 145.6 231 41.6
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 1.9e-30 137.5 297 36.7
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 4.1e-30 136.3 282 36.9
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.2e-30 135.2 158 55.1
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.7e-29 133.7 129 56.6
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 3.0e-28 130.2 208 47.1
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 4.7e-26 122.9 103 70.9
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 8.1e-26 122.1 178 49.4
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 4.0e-25 119.8 273 39.2
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.4e-22 110.5 107 64.5
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.4e-22 110.5 107 64.5
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.4e-17 94.0 61 73.8
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.4e-16 90.1 144 41.7
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 7.6e-16 89.0 59 71.2
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 7.6e-16 89.0 62 69.4
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 2.2e-15 87.4 117 43.6
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 6.4e-15 85.9 130 43.1
Solyc11g011495.1 Solanum lycopersicum HOM05D006010 ORTHO05D007381 6.0e-13 79.3 52 98.1
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.6e-10 71.2 155 35.5
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.1e-09 67.0 101 42.6
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.1e-09 67.0 101 42.6
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 3.8e-07 60.1 203 31.5
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.9e-06 57.8 72 50.0
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 9.3e-06 55.5 120 35.8


User provided reference genes

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