Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 4.1e-170 601.3 298 100.0
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 6.5e-168 594.0 298 99.0
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 2.7e-166 588.6 298 97.7
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 5.7e-164 580.9 298 96.0
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 5.4e-162 574.3 298 95.6
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 8.0e-158 560.5 298 92.3
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 7.0e-154 547.4 333 84.4
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.8e-141 506.1 298 83.6
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.1e-141 505.4 298 82.2
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 5.2e-141 504.6 291 84.5
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 4.4e-140 501.5 292 84.2
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 7.5e-140 500.7 298 82.2
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 3.2e-138 495.4 292 80.8
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 5.4e-138 494.6 292 82.2
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.0e-137 492.7 292 80.8
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 2.0e-137 492.7 298 80.9
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 2.7e-137 492.3 292 80.8
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 2.7e-137 492.3 292 83.2
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 3.5e-137 491.9 302 81.5
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 4.6e-137 491.5 298 81.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 7.8e-137 490.7 299 80.6
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.0e-136 490.3 298 80.9
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 5.0e-136 488.0 298 80.2
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 5.0e-136 488.0 331 74.3
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 5.6e-135 484.6 299 80.6
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 7.3e-135 484.2 298 78.9
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.2e-134 483.4 298 79.9
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 78.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 3.6e-134 481.9 309 78.3
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 3.6e-134 481.9 292 78.1
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 4.7e-134 481.5 298 76.8
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 6.2e-134 481.1 298 78.9
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 8.1e-134 480.7 297 76.1
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.8e-133 479.6 292 80.1
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.8e-133 479.6 298 78.5
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 1.8e-133 479.6 299 79.9
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 3.1e-133 478.8 298 77.5
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 4.0e-133 478.4 297 78.8
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 6.8e-133 477.6 300 78.3
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 6.8e-133 477.6 294 78.6
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.2e-132 476.9 295 79.3
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.5e-132 476.5 299 78.3
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 2.0e-132 476.1 299 77.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.3e-131 473.4 298 77.2
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.7e-131 473.0 298 75.8
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.2e-131 472.6 299 77.6
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.9e-131 472.2 299 77.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 2.9e-131 472.2 293 79.9
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 8.3e-131 470.7 292 78.8
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.4e-130 469.9 290 79.0
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 2.4e-130 469.2 298 78.5
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 2.4e-130 469.2 298 77.9
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 3.2e-130 468.8 298 76.8
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.1e-130 468.4 299 75.6
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 4.1e-130 468.4 297 76.1
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 9.2e-130 467.2 295 77.3
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 9.2e-130 467.2 298 77.2
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.2e-129 466.8 298 76.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.7e-129 465.7 295 76.6
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 7.8e-129 464.2 292 76.7
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 7.8e-129 464.2 298 75.5
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 7.8e-129 464.2 300 76.0
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 3.9e-128 461.8 299 74.6
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 6.6e-128 461.1 329 70.8
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 9.5e-127 457.2 282 81.6
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 2.1e-126 456.1 291 74.6
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 4.7e-126 454.9 291 73.5
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 6.2e-126 454.5 298 72.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.1e-125 453.8 282 77.3
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 1.1e-125 453.8 291 73.9
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.8e-125 453.0 298 75.8
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 8.9e-125 450.7 291 73.5
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 8.9e-125 450.7 291 73.5
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 8.9e-125 450.7 291 73.5
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 8.9e-125 450.7 291 73.2
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.2e-124 450.3 291 72.9
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 72.2
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 4.4e-124 448.4 298 75.2
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 2.2e-123 446.0 298 71.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 3.7e-123 445.3 298 72.1
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.5e-121 438.7 311 70.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 3.5e-121 438.7 298 73.5
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 3.3e-119 432.2 272 78.7
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 7.3e-119 431.0 239 87.0
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 9.6e-119 430.6 298 73.5
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 2.8e-118 429.1 268 80.2
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 2.8e-118 429.1 294 73.1
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 3.6e-118 428.7 295 69.5
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 9.9e-116 420.6 270 77.0
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.9e-114 416.4 247 81.0
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 7.1e-114 414.5 267 74.9
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.3e-112 409.5 237 83.1
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 5.6e-111 404.8 291 67.7
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.1e-109 399.1 231 83.1
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.4e-106 390.2 247 78.1
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.7e-104 383.3 222 82.0
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 2.4e-98 362.8 238 74.4
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.3e-91 340.5 242 66.9
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 8.4e-91 337.8 287 58.5
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 4.2e-90 335.5 282 65.6
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.0e-88 330.9 291 56.7
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 6.5e-83 311.6 208 70.7
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 8.4e-83 311.2 411 46.2
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 9.4e-66 254.6 231 56.3
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 5.9e-60 235.3 153 76.5
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.0e-56 223.0 258 53.1
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 1.7e-54 217.2 292 39.0
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.7e-54 217.2 248 45.2
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 3.5e-52 209.5 119 84.9
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 4.2e-50 202.6 117 76.1
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.4e-45 187.6 190 53.7
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 3.1e-45 186.4 218 50.0
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 8.3e-38 161.8 234 41.0
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.8e-37 160.6 175 52.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 3.4e-31 139.8 111 62.2
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.1e-26 124.8 73 80.8
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.9e-26 124.0 82 75.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.3e-19 100.5 52 90.4
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.1e-18 98.2 54 83.3
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.4e-16 91.3 60 73.3
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.4e-15 86.7 47 83.0
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 5.8e-15 85.9 52 75.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 9.8e-15 85.1 203 32.5
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.7e-14 84.3 59 67.8
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 6.4e-14 82.4 133 38.3
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 9.2e-13 78.6 46 80.4
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 3.6e-09 66.6 59 57.6
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.1e-08 65.1 166 33.1
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 5.2e-08 62.8 164 29.9
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.2e-07 61.6 81 46.9
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.5e-07 61.2 181 30.4
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 3.4e-07 60.1 166 30.1
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.3e-06 58.2 42 64.3
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.8e-06 56.6 52 55.8
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 4.9e-06 56.2 82 43.9
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 8.4e-06 55.5 26 88.5


User provided reference genes

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