Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.9e-99 365.9 195 100.0
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 9.1e-94 347.1 196 94.9
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.7e-87 326.2 200 89.5
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 4.2e-83 311.6 196 85.7
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 2.7e-82 308.9 199 82.9
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 2.4e-70 269.2 197 74.1
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.1e-67 260.4 203 72.4
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 2.1e-66 256.1 200 73.0
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 6.1e-66 254.6 204 72.5
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.0e-65 253.8 195 70.8
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 5.2e-65 251.5 202 71.3
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 6.8e-65 251.1 207 69.6
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 8.9e-65 250.8 204 72.1
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.2e-64 250.4 204 71.1
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.2e-64 250.4 204 71.1
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 2.0e-64 249.6 199 72.9
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.6e-64 249.2 204 70.6
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 9.8e-64 247.3 196 69.4
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.7e-63 246.5 195 73.3
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.7e-63 245.4 204 71.1
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 4.9e-63 245.0 204 71.1
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.4e-62 243.4 199 66.3
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 5.4e-62 241.5 204 70.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 7.0e-62 241.1 193 71.5
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 7.0e-62 241.1 201 70.1
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.2e-61 240.4 198 73.2
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 2.0e-61 239.6 204 68.6
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.0e-61 239.6 203 70.0
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 5.9e-61 238.0 204 68.6
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.0e-60 237.3 206 66.5
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 1.3e-60 236.9 200 67.0
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.3e-60 236.9 193 71.0
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.3e-60 236.1 202 68.3
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 3.0e-60 235.7 199 70.4
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 3.9e-60 235.3 202 68.8
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 3.9e-60 235.3 200 68.5
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.1e-59 233.8 196 67.3
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 1.1e-59 233.8 204 67.2
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 1.9e-59 233.0 201 69.2
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.5e-59 232.6 207 67.6
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 2.5e-59 232.6 196 65.3
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 3.3e-59 232.3 199 69.8
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 3.3e-59 232.3 202 69.3
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 3.3e-59 232.3 203 65.5
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 7.3e-59 231.1 206 68.0
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 9.5e-59 230.7 193 65.3
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 1.6e-58 229.9 204 68.1
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 2.8e-58 229.2 204 65.7
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 4.7e-58 228.4 209 64.6
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.1e-57 227.3 206 67.5
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.2e-56 223.8 209 64.6
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.5e-56 223.4 198 66.2
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 2.0e-56 223.0 209 64.1
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 3.4e-56 222.2 199 62.8
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 7.5e-56 221.1 206 63.6
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 7.5e-56 221.1 202 65.8
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 9.8e-56 220.7 206 62.6
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.7e-55 219.9 205 65.4
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 1.7e-55 219.9 194 64.4
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 3.7e-55 218.8 207 64.3
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 6.4e-55 218.0 199 63.3
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 8.3e-55 217.6 204 62.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 8.3e-55 217.6 196 66.3
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.3e-55 217.6 203 64.0
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.9e-54 216.5 197 64.5
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.4e-54 216.1 203 64.0
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 2.4e-54 216.1 195 63.6
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 3.2e-54 215.7 203 63.5
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 4.1e-54 215.3 200 66.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 4.1e-54 215.3 210 61.0
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 7.0e-54 214.5 204 63.2
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.0e-54 214.5 204 63.2
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-53 213.8 203 63.1
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-53 213.8 203 63.1
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.2e-53 213.8 209 61.7
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.6e-53 213.4 199 66.8
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.6e-53 213.4 211 60.7
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 3.5e-53 212.2 199 62.8
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.0e-52 210.7 204 64.2
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.3e-52 210.3 198 62.1
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.7e-52 209.9 202 63.4
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.9e-52 208.8 197 64.5
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 5.0e-52 208.4 208 62.5
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.5e-51 206.8 202 63.4
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.5e-51 206.1 198 63.1
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.3e-51 204.5 207 63.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 2.8e-50 202.6 196 62.2
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 4.7e-50 201.8 170 70.6
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.4e-49 200.3 200 62.0
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 2.3e-49 199.5 200 63.0
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.2e-48 197.2 199 61.8
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.0e-48 196.4 213 56.8
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.3e-47 193.7 202 60.4
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.7e-47 193.4 204 59.3
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.7e-47 192.2 201 57.7
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 4.9e-47 191.8 207 60.9
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 4.1e-46 188.7 193 59.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.1e-46 188.0 204 59.8
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 9.2e-46 187.6 207 58.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 9.2e-46 187.6 204 58.3
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.6e-45 186.8 210 56.7
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.5e-45 185.7 194 59.3
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 6.0e-45 184.9 215 56.3
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 6.0e-45 184.9 206 56.8
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 6.0e-45 184.9 206 56.8
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 6.0e-45 184.9 215 56.3
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 6.0e-45 184.9 197 56.3
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 7.8e-45 184.5 213 56.8
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 7.8e-45 184.5 202 58.9
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.3e-44 183.0 206 58.3
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 3.0e-44 182.6 213 55.9
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 3.0e-44 182.6 213 55.9
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 3.0e-44 182.6 213 55.9
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.9e-44 182.2 211 56.9
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.1e-43 180.6 208 58.2
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.1e-43 180.6 208 58.2
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.5e-43 180.3 206 57.3
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.9e-43 179.9 193 58.0
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 3.3e-43 179.1 217 54.4
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 3.3e-43 179.1 207 56.5
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 1.6e-42 176.8 191 56.5
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 6.2e-42 174.9 207 56.0
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 6.2e-42 174.9 207 55.6
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.8e-41 173.3 207 55.1
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 3.1e-41 172.6 212 54.2
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.0e-41 172.2 207 55.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 2.2e-39 166.4 203 52.7
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.4e-38 162.9 199 55.8
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.4e-38 162.9 205 54.6
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 1.0e-36 157.5 82 100.0
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.0e-36 156.0 201 52.2
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 3.9e-36 155.6 200 54.5
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 9.6e-35 151.0 178 53.4
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.4e-33 147.1 198 50.0
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.8e-33 146.7 198 49.0
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.8e-33 146.7 147 58.5
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.0e-32 143.3 183 50.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 4.4e-32 142.1 198 48.5
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.4e-32 142.1 120 70.8
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 3.8e-31 139.0 115 65.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.9e-31 138.7 154 54.5
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.3e-27 125.6 143 51.0
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 4.3e-27 125.6 176 51.7
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.6e-27 125.2 143 49.0
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 9.6e-27 124.4 166 44.6
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 3.1e-25 119.4 141 51.8
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 4.2e-22 109.0 141 47.5
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 9.3e-22 107.8 128 55.5
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 6.7e-20 101.7 140 45.0
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 4.3e-19 99.0 130 49.2
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.8e-18 96.3 72 68.1
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 3.7e-18 95.9 158 45.6
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.9e-17 91.7 130 46.2
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.5e-16 90.5 198 37.9
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 4.9e-15 85.5 116 50.0
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-14 84.0 58 72.4
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.2e-14 82.8 191 40.8
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 1.3e-12 77.4 121 43.0
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.1e-12 75.5 139 43.2
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 2.8e-10 69.7 145 35.2


User provided reference genes

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