Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g016820 Solanum pennellii HOM05D004933 ORTHO05D005465 3.1e-84 315.1 158 100.0
Solyc12g043070.2 Solanum lycopersicum HOM05D004933 ORTHO05D005465 1.5e-78 296.2 157 95.5
Sopen03g025600 Solanum pennellii HOM05D004933 ORTHO05D005465 1.9e-78 295.8 157 94.3
Solyc03g095680.2 Solanum lycopersicum HOM05D004933 ORTHO05D005465 2.5e-78 295.4 157 94.9
Solyc07g064540.3 Solanum lycopersicum HOM05D004933 ORTHO05D005465 1.2e-75 286.6 157 93.6
Nitab4.5_0006356g0020 Nicotiana tabacum HOM05D004933 ORTHO05D005465 6.3e-69 264.2 157 82.8
Nitab4.5_0000171g0280 Nicotiana tabacum HOM05D004933 ORTHO05D005465 1.5e-67 259.6 157 80.3
Peaxi162Scf00073g02333 Petunia axillaris HOM05D004933 ORTHO05D005465 7.2e-65 250.8 157 78.3
Solyc09g042480.2 Solanum lycopersicum HOM05D004933 ORTHO05D005465 2.7e-43 179.1 155 65.2
Hma1.2p1_0264F.1_g105950 Hydrangea macrophylla HOM05D004933 ORTHO05D005465 8.0e-40 167.5 161 54.7
Hma1.2p1_1805F.1_g303150 Hydrangea macrophylla HOM05D004933 ORTHO05D005465 1.4e-39 166.8 161 54.0
arahy.Tifrunner.gnm1.ann1.LX8ZS6 Arachis hypogaea HOM05D004933 ORTHO05D005465 5.2e-39 164.9 164 51.8
arahy.Tifrunner.gnm1.ann1.561PLB Arachis hypogaea HOM05D004933 ORTHO05D005465 8.8e-39 164.1 164 51.8
Atru.chr12.195 Acer truncatum HOM05D004933 ORTHO05D005465 7.0e-36 154.5 159 48.4
Lj8C53G7 Lonicera japonica HOM05D004933 ORTHO05D005465 9.2e-36 154.1 158 51.3
LjContig00408g0012805 Lotus japonicus HOM05D004933 ORTHO05D005465 1.6e-35 153.3 164 48.8
Oeu064001.1 Olea europaea HOM05D004933 ORTHO05D005465 5.9e-35 151.4 158 50.0
TPR.G33913 Trifolium pratense HOM05D004933 ORTHO05D005465 7.7e-35 151.0 158 50.0
Ciclev10030489m.g Citrus clementina HOM05D004933 ORTHO05D005465 1.7e-34 149.8 162 50.0
DCAR_014660 Daucus carota HOM05D004933 ORTHO05D005465 1.7e-34 149.8 159 49.1
Migut.F00567 Erythranthe guttata HOM05D004933 ORTHO05D005465 1.7e-34 149.8 158 49.4
Glyma.02G219200 Glycine max HOM05D004933 ORTHO05D005465 3.8e-34 148.7 164 47.6
Gohir.D10G184300 Gossypium hirsutum HOM05D004933 ORTHO05D005465 3.8e-34 148.7 158 48.1
Gorai.011G206500 Gossypium raimondii HOM05D004933 ORTHO05D005465 3.8e-34 148.7 158 48.1
Actinidia13639 Actinidia chinensis HOM05D004933 ORTHO05D005465 5.0e-34 148.3 159 47.2
COL.COLO4_19474 Corchorus olitorius HOM05D004933 ORTHO05D005465 5.0e-34 148.3 163 49.7
Gohir.A10G177700 Gossypium hirsutum HOM05D004933 ORTHO05D005465 5.0e-34 148.3 158 48.1
GSVIVG01032657001 Vitis vinifera HOM05D004933 ORTHO05D005465 8.6e-34 147.5 163 48.5
Medtr5g067980 Medicago truncatula HOM05D004933 ORTHO05D005465 1.1e-33 147.1 159 47.8
QL08p065080 Quercus lobata HOM05D004933 ORTHO05D005465 1.1e-33 147.1 159 46.5
CSS0031284 Camellia sinensis var. sinensis HOM05D004933 ORTHO05D005465 1.5e-33 146.7 159 49.7
Psat2g061800 Pisum sativum HOM05D004933 ORTHO05D005465 3.3e-33 145.6 164 47.6
Phvul.008G186300 Phaseolus vulgaris HOM05D004933 ORTHO05D005465 4.3e-33 145.2 162 48.1
Cpa.g.sc19.41 Carica papaya HOM05D004933 ORTHO05D005465 5.6e-33 144.8 161 44.7
VMungo0647G1932 Vigna mungo HOM05D004933 ORTHO05D005465 5.6e-33 144.8 162 48.1
Rhsim03G0153500 Rhododendron simsii HOM05D004933 ORTHO05D005465 7.3e-33 144.4 159 46.5
Thecc.10G184900 Theobroma cacao HOM05D004933 ORTHO05D005465 1.2e-32 143.7 165 49.1
Cfa001196 Carpinus fangiana HOM05D004933 ORTHO05D005465 2.8e-32 142.5 159 45.9
Haze_17369 Corylus avellana HOM05D004933 ORTHO05D005465 3.6e-32 142.1 159 46.5
Lalb_Chr17g0344711 Lupinus albus HOM05D004933 ORTHO05D005465 1.0e-31 140.6 160 48.8
CANSAT56G0526 Cannabis sativa HOM05D004933 ORTHO05D005465 2.3e-31 139.4 167 46.1
Eucgr.J00103 Eucalyptus grandis HOM05D004933 ORTHO05D005465 4.0e-31 138.7 164 48.8
Hund13438 Selenicereus undatus HOM05D004933 ORTHO05D005465 4.0e-31 138.7 159 48.4
RcHm_v2.0_Chr1g0372551 Rosa chinensis HOM05D004933 ORTHO05D005465 8.9e-31 137.5 168 48.8
Sc11g0006050 Simmondsia chinensis HOM05D004933 ORTHO05D005465 8.9e-31 137.5 159 45.9
TWI09G0099 Tripterygium wilfordii HOM05D004933 ORTHO05D005465 2.6e-30 136.0 165 45.5
CiPaw.01G307300 Carya illinoinensis HOM05D004933 ORTHO05D005465 5.7e-30 134.8 162 45.1
Manes.10G003100 Manihot esculenta HOM05D004933 ORTHO05D005465 1.7e-29 133.3 163 43.6
Duzib106G0698 Durio zibethinus HOM05D004933 ORTHO05D005465 2.9e-29 132.5 162 48.1
Cc02_g05220 Coffea canephora HOM05D004933 ORTHO05D005465 1.8e-28 129.8 168 44.6
MD01G1169300 Malus domestica HOM05D004933 ORTHO05D005465 1.8e-28 129.8 160 46.9
Sabra19G0074700 Salix brachista HOM05D004933 ORTHO05D005465 7.0e-28 127.9 162 41.4
FAN06G3663 Fragaria x ananassa HOM05D004933 ORTHO05D005465 9.2e-28 127.5 170 45.9
vmacro06901 Vaccinium macrocarpon HOM05D004933 ORTHO05D005465 1.2e-27 127.1 159 44.7
FAN03G3286 Fragaria x ananassa HOM05D004933 ORTHO05D005465 2.0e-27 126.3 170 44.7
FAN10G2846 Fragaria x ananassa HOM05D004933 ORTHO05D005465 2.0e-27 126.3 170 45.9
Potri.019G060900 Populus trichocarpa HOM05D004933 ORTHO05D005465 3.5e-27 125.6 164 40.9
TAR623G0849 Trochodendron aralioides HOM05D004933 ORTHO05D005465 3.5e-27 125.6 158 42.4
Nn2g10269 Nelumbo nucifera HOM05D004933 ORTHO05D005465 7.8e-27 124.4 160 44.4
FAN18G3827 Fragaria x ananassa HOM05D004933 ORTHO05D005465 1.0e-26 124.0 170 45.3
Ah.12g064450 Amaranthus hybridus HOM05D004933 ORTHO05D005465 1.3e-26 123.6 164 46.3
PGR044G2398 Punica granatum HOM05D004933 ORTHO05D005465 1.3e-26 123.6 170 44.1
THA.LOC104824249 Tarenaya hassleriana HOM05D004933 ORTHO05D005465 3.9e-26 122.1 163 42.9
FvH4_7g26110 Fragaria vesca HOM05D004933 ORTHO05D005465 1.1e-25 120.6 170 44.1
Sed0014960 Sechium edule HOM05D004933 ORTHO05D005465 1.9e-25 119.8 160 43.8
MELO3C020016.2 Cucumis melo HOM05D004933 ORTHO05D005465 2.5e-25 119.4 164 43.3
EL10Ac2g02668 Beta vulgaris HOM05D004933 ORTHO05D005465 4.3e-25 118.6 160 43.1
unitig_0.g1674 Utricularia gibba HOM05D004933 ORTHO05D005465 4.3e-25 118.6 158 40.5
ClCG11G005620 Citrullus lanatus HOM05D004933 ORTHO05D005465 5.6e-25 118.2 163 42.3
CsaV3_6G002390 Cucumis sativus L. HOM05D004933 ORTHO05D005465 3.6e-24 115.5 164 42.7
HanXRQChr14g0460551 Helianthus annuus HOM05D004933 ORTHO05D005465 1.2e-22 110.5 165 43.0
Aqoxy4G03277 Aquilegia oxysepala HOM05D004933 ORTHO05D005465 4.4e-22 108.6 158 38.0
MBI15_g39394_MAGBIO Magnolia biondii HOM05D004933 ORTHO05D005465 5.8e-22 108.2 167 40.7
AUR62030592 Chenopodium quinoa HOM05D004933 ORTHO05D005465 3.2e-20 102.4 163 37.4
AUR62024946 Chenopodium quinoa HOM05D004933 ORTHO05D005465 4.1e-20 102.1 163 36.8
Aa31LG3G1370 Aethionema arabicum HOM05D004933 ORTHO05D005465 1.6e-19 100.1 158 36.7
Thhalv10016132m.g Eutrema salsugineum HOM05D004933 ORTHO05D005465 4.6e-19 98.6 162 37.7
Sp4g23090 Schrenkiella parvula HOM05D004933 ORTHO05D005465 1.0e-18 97.4 164 36.6
AL4G38660 Arabidopsis lyrata HOM05D004933 ORTHO05D005465 5.0e-18 95.1 163 37.4
ECA238G2994 Erigeron canadensis HOM05D004933 ORTHO05D005465 5.0e-18 95.1 161 37.3
AL4G34440 Arabidopsis lyrata HOM05D004933 ORTHO05D005465 1.1e-17 94.0 163 36.8
AT2G40770 Arabidopsis thaliana HOM05D004933 ORTHO05D005465 4.3e-17 92.0 163 35.6
Lsat_1_v5_gn_2_126780 Lactuca sativa HOM05D004933 ORTHO05D005465 4.3e-17 92.0 156 36.5
Carub.0004s2307 Capsella rubella HOM05D004933 ORTHO05D005465 2.1e-16 89.7 161 37.3
CARHR135870 Cardamine hirsuta HOM05D004933 ORTHO05D005465 2.8e-16 89.4 161 36.0
ATR1127G041 Amborella trichopoda HOM05D004933 ORTHO05D005465 2.6e-14 82.8 172 33.7
CDE04G3054 Ceratophyllum demersum HOM05D004933 ORTHO05D005465 5.8e-14 81.6 162 34.0
PSO017G2233 Papaver somniferum HOM05D004933 ORTHO05D005465 5.8e-14 81.6 174 36.8
PSO170G4230 Papaver somniferum HOM05D004933 ORTHO05D005465 2.9e-13 79.3 177 37.9
BolC4t28354H Brassica oleracea HOM05D004933 ORTHO05D005465 2.1e-11 73.2 163 32.5
BraA04t18570Z Brassica rapa HOM05D004933 ORTHO05D005465 4.6e-11 72.0 164 32.9
A04p31150 Brassica napus HOM05D004933 ORTHO05D005465 1.0e-10 70.9 164 32.3
BcaC02g12882 Brassica carinata HOM05D004933 ORTHO05D005465 1.7e-10 70.1 163 31.9
C04p68550 Brassica napus HOM05D004933 ORTHO05D005465 1.7e-10 70.1 163 31.9
HPP92_012544 Vanilla planifolia HOM05D004933 ORTHO05D005465 8.1e-08 61.2 164 31.1
Dinv21857 Davidia involucrata HOM05D004933 ORTHO05D005465 1.1e-07 60.8 63 47.6


User provided reference genes

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