Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g002500 Solanum pennellii HOM05D000461 ORTHO05D051182 2.7e-64 248.4 119 100.0
Solyc10g006550.3 Solanum lycopersicum HOM05D000461 ORTHO05D051182 1.6e-08 63.2 31 93.5
PGSC0003DMG402023368 Solanum tuberosum HOM05D000461 ORTHO05D001829 1.6e-08 63.2 75 48.0
QL08p054300 Quercus lobata HOM05D000461 ORTHO05D001829 1.4e-07 60.1 72 45.8
CiPaw.02G172000 Carya illinoinensis HOM05D000461 ORTHO05D001829 1.8e-07 59.7 72 44.4
CAN.G321.59 Capsicum annuum HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
Ciclev10030820m.g Citrus clementina HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 44.4
Nitab4.5_0001450g0110 Nicotiana tabacum HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
Potri.010G227200 Populus trichocarpa HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
Sabra10G0175300 Salix brachista HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
Solyc05g055590.2 Solanum lycopersicum HOM05D000461 ORTHO05D001829 3.0e-07 58.9 37 70.3
Solyc11g008320.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
Sopen02g011460 Solanum pennellii HOM05D000461 ORTHO05D001829 3.0e-07 58.9 37 70.3
Sopen05g034040 Solanum pennellii HOM05D000461 ORTHO05D001829 3.0e-07 58.9 37 70.3
Sopen11g004130 Solanum pennellii HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
PGSC0003DMG400007432 Solanum tuberosum HOM05D000461 ORTHO05D001829 3.0e-07 58.9 72 45.8
Cfa001807 Carpinus fangiana HOM05D000461 ORTHO05D001829 3.9e-07 58.5 72 44.4
Cc02_g10900 Coffea canephora HOM05D000461 ORTHO05D001829 3.9e-07 58.5 72 44.4
CANSAT56G1841 Cannabis sativa HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
FvH4_7g18750 Fragaria vesca HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
FAN01G1111 Fragaria x ananassa HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
FAN06G2076 Fragaria x ananassa HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
FAN06G2768 Fragaria x ananassa HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
FAN10G1176 Fragaria x ananassa HOM05D000461 ORTHO05D020335 5.1e-07 58.2 72 44.4
Prupe.2G208600 Prunus persica HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
RcHm_v2.0_Chr1g0362561 Rosa chinensis HOM05D000461 ORTHO05D001829 5.1e-07 58.2 72 44.4
PGR142G1866 Punica granatum HOM05D000461 ORTHO05D001829 6.7e-07 57.8 71 45.1
Aa31LG3G2970 Aethionema arabicum HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 43.1
Eucgr.G02868 Eucalyptus grandis HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 41.7
Thhalv10020007m.g Eutrema salsugineum HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 43.1
MBI11_g42353_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 41.7
MD01G1103000 Malus domestica HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 44.4
PSO063G5841 Papaver somniferum HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 44.4
PSO339G0701 Papaver somniferum HOM05D000461 ORTHO05D001829 8.8e-07 57.4 72 44.4
Cpa.g.c37043 Carica papaya HOM05D000461 ORTHO05D001829 1.1e-06 57.0 72 44.4
Medtr1g050535 Medicago truncatula HOM05D000461 ORTHO05D001829 1.1e-06 57.0 36 69.4
Nn6g35273 Nelumbo nucifera HOM05D000461 ORTHO05D001829 1.1e-06 57.0 72 43.1
Nitab4.5_0006187g0050 Nicotiana tabacum HOM05D000461 ORTHO05D001829 1.1e-06 57.0 72 44.4
Psat6g093120 Pisum sativum HOM05D000461 ORTHO05D001829 1.1e-06 57.0 36 69.4
Sed0015646 Sechium edule HOM05D000461 ORTHO05D001829 1.1e-06 57.0 72 44.4
TWI38G0024 Tripterygium wilfordii HOM05D000461 ORTHO05D001829 1.1e-06 57.0 36 69.4
Aqoxy1G01138 Aquilegia oxysepala HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
EL10Ac2g03654 Beta vulgaris HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 44.4
BcaC01g04185 Brassica carinata HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
BcaNung07315 Brassica carinata HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
A03p36510 Brassica napus HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
C03p44110 Brassica napus HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
BolC3t16686H Brassica oleracea HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
BraA03t12818Z Brassica rapa HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
Sp3g08660 Schrenkiella parvula HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 43.1
GSVIVG01016218001 Vitis vinifera HOM05D000461 ORTHO05D001829 1.5e-06 56.6 72 44.4
TAR623G0154 Trochodendron aralioides HOM05D000461 ORTHO05D001829 2.0e-06 56.2 71 43.7
AT3G10390 Arabidopsis thaliana HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 41.7
CARHR084870 Cardamine hirsuta HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 41.7
ClCG08G007730 Citrullus lanatus HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 43.1
Dinv36390 Davidia involucrata HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 41.7
Lj5g0015707 Lotus japonicus HOM05D000461 ORTHO05D001829 2.6e-06 55.8 36 66.7
Manes.10G050300 Manihot esculenta HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 43.1
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 43.1
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 43.1
THA.LOC104816428 Tarenaya hassleriana HOM05D000461 ORTHO05D001829 2.6e-06 55.8 72 43.1
VMungo0720G3081 Vigna mungo HOM05D000461 ORTHO05D001829 2.6e-06 55.8 36 66.7
Carub.0003s0957 Capsella rubella HOM05D000461 ORTHO05D001829 3.3e-06 55.5 72 41.7
MELO3C019826.2 Cucumis melo HOM05D000461 ORTHO05D001829 3.3e-06 55.5 72 43.1
CsaV3_6G036720 Cucumis sativus L. HOM05D000461 ORTHO05D001829 3.3e-06 55.5 72 43.1
Dinv31235 Davidia involucrata HOM05D000461 ORTHO05D001829 3.3e-06 55.5 72 41.7
FAN03G3029 Fragaria x ananassa HOM05D000461 ORTHO05D001829 3.3e-06 55.5 36 66.7
Peaxi162Scf00176g01518 Petunia axillaris HOM05D000461 ORTHO05D001829 3.3e-06 55.5 72 43.1
Phvul.007G246500 Phaseolus vulgaris HOM05D000461 ORTHO05D001829 3.3e-06 55.5 36 66.7
Thecc.10G083900 Theobroma cacao HOM05D000461 ORTHO05D001829 3.3e-06 55.5 72 41.7
Ca_18109_v3 Cicer arietinum L. HOM05D000461 ORTHO05D001829 4.4e-06 55.1 36 66.7
Haze_16741 Corylus avellana HOM05D000461 ORTHO05D001829 4.4e-06 55.1 72 43.1
HanXRQChr08g0218521 Helianthus annuus HOM05D000461 ORTHO05D001829 4.4e-06 55.1 72 41.7
Nitab4.5_0001760g0050 Nicotiana tabacum HOM05D000461 ORTHO05D001829 4.4e-06 55.1 72 44.4
Sabra08G0023500 Salix brachista HOM05D000461 ORTHO05D001829 4.4e-06 55.1 72 43.1
TPR.G22708 Trifolium pratense HOM05D000461 ORTHO05D001829 4.4e-06 55.1 36 66.7
DCAR_006413 Daucus carota HOM05D000461 ORTHO05D001829 5.7e-06 54.7 80 37.5
Lsat_1_v5_gn_8_20820 Lactuca sativa HOM05D000461 ORTHO05D001829 5.7e-06 54.7 70 42.9
Potri.008G035200 Populus trichocarpa HOM05D000461 ORTHO05D001829 5.7e-06 54.7 72 43.1
Hund08931 Selenicereus undatus HOM05D000461 ORTHO05D001829 5.7e-06 54.7 72 43.1
Duzib114G0428 Durio zibethinus HOM05D000461 ORTHO05D001829 7.4e-06 54.3 72 40.3
ECA233G3538 Erigeron canadensis HOM05D000461 ORTHO05D001829 7.4e-06 54.3 72 41.7
Gohir.A06G168200 Gossypium hirsutum HOM05D000461 ORTHO05D001829 7.4e-06 54.3 72 40.3
Gohir.D06G175700 Gossypium hirsutum HOM05D000461 ORTHO05D001829 7.4e-06 54.3 72 40.3
Gorai.010G206000 Gossypium raimondii HOM05D000461 ORTHO05D001829 7.4e-06 54.3 72 40.3
SHI08884 Sapria himalayana HOM05D000461 ORTHO05D001829 7.4e-06 54.3 72 40.3
arahy.Tifrunner.gnm1.ann1.5UD55A Arachis hypogaea HOM05D000461 ORTHO05D001829 9.7e-06 53.9 36 63.9
Hma1.2p1_0145F.1_g065380 Hydrangea macrophylla HOM05D000461 ORTHO05D001829 9.7e-06 53.9 72 40.3
Hma1.2p1_2705F.1_g327180 Hydrangea macrophylla HOM05D000461 ORTHO05D001829 9.7e-06 53.9 72 40.3
HPP92_022567 Vanilla planifolia HOM05D000461 ORTHO05D001829 9.7e-06 53.9 72 41.7


User provided reference genes

Program Settings