Gene: Solyc11g008320.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g008320.3
  • Transcript Identifier Solyc11g008320.3.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 2557060-2561833 : negative

Gene Family Information

  • ID HOM05D000461
  • #Genes/#Species 1145/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g008320.3.1
  • uniprot A0A3Q7IQK8
  • gene_id Solyc11g008320

Descriptions

  • Description Lysine-specific histone demethylase 1-like protein 3 (AHRD V3.3 *** A0A1U8F4Y3_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006325
IEA
GOA Databasechromatin organization
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G62830
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G62830
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT3G10390
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT3G10390
GO:0016575
ISO
PLAZA Integrative Orthologyhistone deacetylation AT3G10390
GO:0009911
ISO
PLAZA Integrative Orthologypositive regulation of flower development AT3G10390
GO:0051568
ISO
PLAZA Integrative Orthologyhistone H3-K4 methylation AT1G62830

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0016491
IBA
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G62830
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G62830

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR007526 SWIRM domain
IPR002937 Amine oxidase
IPR009057 Homeobox-like domain superfamily
IPR036188 FAD/NAD(P)-binding domain superfamily
Mapman id Description
12.3.3.7.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.AOD group histone demethylase activities.lysine-specific demethylase (LDL/KDM1)