Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 8.5e-97 357.1 188 100.0
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.2e-96 354.0 188 97.9
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.6e-95 352.8 188 97.9
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.7e-79 298.9 205 80.5
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.7e-79 298.1 162 95.7
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-76 288.9 192 80.2
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-76 288.9 192 80.2
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.1e-75 285.0 189 84.1
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 6.5e-73 277.7 191 79.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.2e-72 275.0 190 76.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 9.4e-72 273.9 189 79.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 9.4e-72 273.9 191 79.6
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.1e-71 272.7 190 78.4
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.7e-71 272.3 190 76.8
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 6.1e-71 271.2 189 77.2
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.4e-70 270.0 190 78.4
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 3.0e-70 268.9 189 76.2
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.2e-69 266.9 189 78.8
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.0e-69 266.2 193 76.2
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.3e-68 263.5 194 74.2
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-68 263.1 190 74.7
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.2e-68 262.7 190 74.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 2.2e-68 262.7 189 76.7
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.2e-68 262.7 191 74.3
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.8e-68 262.3 191 72.3
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 4.8e-68 261.5 191 74.9
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 6.3e-68 261.2 188 74.5
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.3e-68 261.2 191 73.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 8.3e-68 260.8 189 73.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-67 260.4 190 74.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.4e-67 260.0 189 72.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.8e-67 259.6 194 72.2
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.8e-67 259.6 189 74.1
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.1e-67 258.8 190 73.2
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 3.1e-67 258.8 189 73.5
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.1e-67 258.5 190 73.2
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 5.4e-67 258.1 190 72.1
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.4e-67 258.1 173 78.6
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 9.1e-67 257.3 190 72.6
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.1e-67 257.3 190 72.6
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.1e-67 257.3 190 72.6
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 3.5e-66 255.4 190 72.6
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.5e-66 255.4 190 72.1
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 3.5e-66 255.4 189 72.5
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 7.7e-66 254.2 187 71.1
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.0e-65 253.8 183 74.3
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.3e-65 253.4 193 72.0
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.3e-65 252.7 192 73.4
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.9e-65 252.3 190 72.6
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.9e-65 252.3 190 71.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.9e-65 252.3 183 74.3
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 3.8e-65 251.9 194 70.1
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 6.5e-65 251.1 189 72.0
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.1e-64 250.4 183 72.7
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.1e-64 250.4 189 72.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.1e-64 250.4 180 72.8
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.2e-64 248.8 184 73.4
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.2e-64 248.4 187 71.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 7.2e-64 247.7 191 73.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.2e-64 247.7 187 71.7
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.2e-63 246.9 184 73.4
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.6e-63 246.5 180 72.2
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.1e-63 246.1 190 70.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.1e-63 244.6 191 70.2
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 6.1e-63 244.6 170 76.5
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.1e-63 244.6 190 69.5
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 8.0e-63 244.2 184 70.1
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.4e-62 243.4 187 70.1
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.3e-62 242.7 185 69.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.0e-62 242.3 191 72.3
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.0e-62 242.3 183 70.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.2e-62 241.5 194 69.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 6.8e-62 241.1 187 69.5
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-61 240.0 192 71.9
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.5e-61 240.0 187 70.1
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.0e-61 239.6 178 70.8
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.6e-61 239.2 191 71.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 2.6e-61 239.2 191 71.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-61 238.4 192 71.4
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.4e-61 238.4 192 71.4
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.4e-61 238.4 192 71.4
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 4.4e-61 238.4 228 60.5
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 5.7e-61 238.0 191 71.7
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.8e-61 237.3 188 69.7
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 9.8e-61 237.3 189 70.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 9.8e-61 237.3 184 68.5
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.3e-60 236.9 191 71.7
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 193 72.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 193 72.0
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.7e-60 236.5 190 69.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.2e-60 236.1 187 69.5
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.8e-60 235.7 190 68.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 7.0e-59 231.1 188 67.6
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 7.0e-59 231.1 188 67.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.2e-58 230.3 183 68.3
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.2e-58 230.3 183 69.4
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.6e-58 229.9 188 67.6
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.0e-58 229.6 188 70.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.7e-58 229.2 194 66.0
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 4.5e-58 228.4 193 68.9
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.0e-57 227.3 217 60.4
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-57 225.7 156 76.9
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-57 225.7 156 77.6
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 2.9e-57 225.7 156 76.9
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.8e-57 225.3 143 81.8
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 3.8e-57 225.3 159 74.8
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.5e-56 223.4 191 64.4
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.5e-56 222.6 191 64.4
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 5.6e-56 221.5 159 76.1
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 7.3e-56 221.1 192 64.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.1e-55 219.5 189 68.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.8e-55 219.2 170 68.8
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.7e-55 218.4 191 63.4
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.0e-54 217.2 193 63.2
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 2.3e-54 216.1 187 64.7
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.3e-54 216.1 201 60.7
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 3.0e-54 215.7 192 68.2
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 8.9e-54 214.2 126 84.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 88.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.7e-53 211.5 219 57.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.2e-52 209.5 125 81.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-52 209.1 159 71.1
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.4e-51 206.1 181 59.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.2e-51 205.7 155 70.3
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 3.2e-51 205.7 125 84.0
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.1e-51 205.3 181 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 9.2e-51 204.1 144 74.3
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.7e-50 202.6 124 83.1
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 5.9e-50 201.4 173 60.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-49 200.3 198 59.1
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-48 196.4 191 62.3
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.3e-48 195.7 132 75.8
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.3e-48 195.3 190 59.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 5.6e-48 194.9 152 69.1
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 9.5e-48 194.1 152 69.1
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-47 193.7 152 69.1
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-47 192.2 200 59.0
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 8.9e-46 187.6 198 57.6
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.5e-45 186.8 147 70.1
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 3.4e-45 185.7 156 64.1
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-44 183.7 156 63.5
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.7e-44 182.2 135 70.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-40 170.2 201 55.2
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 7.3e-40 167.9 125 67.2
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 5.2e-38 161.8 187 52.4
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.9e-36 156.0 186 50.5
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 2.9e-36 156.0 124 62.9
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.7e-36 155.6 189 48.1
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.9e-35 153.3 186 50.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.7e-34 149.4 129 62.0
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 4.6e-34 148.7 144 56.9
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 7.8e-34 147.9 96 82.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.3e-33 146.4 131 61.8
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 8.6e-33 144.4 127 56.7
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-32 143.7 102 67.6
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 9.5e-32 141.0 124 65.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-30 137.1 111 65.8
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-30 136.7 87 81.6
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-29 133.7 191 42.9
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 8.4e-28 127.9 154 55.2
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.4e-27 127.1 103 58.3
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.1e-23 113.2 69 82.6
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.3e-20 104.0 68 76.5
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.9e-20 102.1 68 75.0
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.7e-17 93.6 91 53.8
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.3e-17 93.2 74 68.9
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 5.1e-17 92.0 74 67.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.7e-17 91.3 57 77.2
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-16 90.9 128 50.8
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.5e-16 90.5 54 79.6
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-16 90.1 128 50.8
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 8.1e-15 84.7 124 39.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-14 84.0 47 85.1
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.7e-12 77.0 121 48.8
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.3e-09 67.4 81 49.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.9e-08 63.5 50 66.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.9e-08 63.5 57 56.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.3e-08 62.8 57 56.1
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 2.1e-07 60.1 57 54.4


User provided reference genes

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