Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 0.0e+00 1969.5 993 100.0
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 0.0e+00 1944.1 993 98.9
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 0.0e+00 1525.8 1025 76.9
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 0.0e+00 1491.1 995 77.7
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 0.0e+00 1424.5 1000 74.8
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 5.7e-309 1064.3 1000 57.5
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 4.2e-304 1048.1 1033 54.4
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 7.9e-303 1043.9 1018 54.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.5e-301 1039.6 1004 56.3
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 2.8e-300 1035.4 1027 53.8
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.7e-300 1035.0 1003 56.3
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 6.5e-297 1024.2 998 54.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 4.7e-295 1018.1 1001 55.9
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.0e-295 1017.3 1011 55.0
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 8.8e-294 1013.8 989 55.3
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 2.0e-293 1012.7 954 57.2
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.3e-293 1011.9 937 56.2
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 5.7e-293 1011.1 998 54.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.3e-292 1010.0 755 65.7
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.8e-292 1008.8 557 89.2
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.4e-291 1005.7 998 55.0
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.1e-291 1005.4 999 54.2
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 7.0e-291 1004.2 1034 52.7
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.2e-290 1003.4 1029 53.0
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.5e-290 1001.5 746 66.6
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.7e-289 999.6 1093 51.9
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.5e-289 997.7 998 54.0
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 7.2e-288 994.2 935 55.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.6e-287 993.0 999 54.9
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-287 991.5 997 54.5
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.1e-287 991.1 1018 54.2
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.6e-285 985.7 996 53.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.4e-285 984.9 1029 52.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 9.1e-283 977.2 1016 52.3
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 9.1e-283 977.2 980 55.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.7e-282 975.7 1018 52.2
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 7.7e-282 974.2 1001 53.5
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 2.9e-281 972.2 999 53.3
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.5e-280 969.9 1016 51.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.9e-280 969.5 1016 51.5
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 9.5e-280 967.2 1011 53.0
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 8.0e-279 964.1 998 53.3
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 5.2e-278 961.4 994 53.2
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 5.2e-278 961.4 1005 51.1
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.4e-277 958.7 1071 50.0
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.7e-276 956.4 1021 51.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.8e-276 955.7 1006 50.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.2e-274 950.3 1019 50.9
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 3.5e-274 948.7 996 51.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 8.6e-273 944.1 1009 51.1
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 7.3e-272 941.0 999 51.2
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 4.1e-267 925.2 962 52.5
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 3.0e-265 919.1 994 50.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 3.0e-265 919.1 995 50.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 9.5e-264 914.1 996 50.8
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.6e-263 913.3 1006 51.0
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.1e-263 912.9 1028 51.3
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.6e-263 912.1 1009 49.3
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 9.8e-261 904.0 999 50.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 5.4e-259 898.3 1003 49.7
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.8e-258 894.4 996 51.2
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.3e-256 888.6 1023 48.1
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-255 887.1 962 51.1
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.5e-253 880.2 994 49.8
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 4.1e-251 872.1 1003 49.2
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 4.7e-247 858.6 1002 50.0
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 5.4e-243 845.1 988 48.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 5.4e-243 845.1 1002 46.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.2e-242 844.0 989 47.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 4.6e-242 842.0 992 47.1
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.8e-242 841.3 1006 46.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 6.2e-239 831.6 988 47.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.8e-238 830.1 758 55.0
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.8e-238 830.1 758 55.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.5e-237 827.0 758 55.3
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 3.4e-237 825.9 774 53.9
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.2e-236 823.2 929 48.4
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.2e-236 823.2 1019 45.9
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 9.3e-235 817.8 690 59.6
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 6.0e-234 815.1 1018 46.3
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 9.6e-232 807.7 1053 44.3
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 9.6e-232 807.7 1001 47.9
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.1e-231 806.6 1007 44.7
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.8e-225 786.9 1003 44.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 8.7e-225 784.6 864 51.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.1e-223 780.0 526 73.2
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 3.7e-215 752.7 579 63.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 6.5e-212 741.9 705 54.5
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 5.7e-208 728.8 458 76.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.3e-201 706.8 1014 42.9
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 3.9e-193 679.5 1055 39.4
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.3e-192 676.4 750 48.8
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.3e-184 649.8 479 68.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.0e-181 640.6 778 48.3
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 7.2e-179 632.1 788 47.5
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.8e-177 627.5 1153 35.8
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 7.5e-176 622.1 846 43.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.8e-175 620.2 812 42.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-171 607.1 993 39.4
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.3e-164 584.7 608 50.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 5.7e-160 569.3 423 72.3
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.7e-156 557.8 1059 36.5
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.6e-155 552.7 721 44.5
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-151 541.2 742 43.3
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.1e-147 528.5 455 61.5
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.1e-147 528.5 455 61.5
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.6e-140 502.7 742 41.9
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-134 485.3 481 51.6
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 2.1e-133 481.1 311 73.3
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 3.1e-129 467.2 276 79.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.8e-129 466.1 767 38.1
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-121 442.2 605 44.0
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.9e-116 423.7 358 59.8
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-115 422.2 623 42.2
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-98 364.8 315 60.3
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-96 359.0 746 33.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 2.1e-93 348.2 522 43.1
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 2.7e-93 347.8 663 36.7
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.8e-92 345.1 165 97.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.9e-85 319.7 807 32.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.8e-82 310.5 549 38.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 3.4e-80 304.3 405 42.2
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.9e-76 290.8 480 40.4
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 2.4e-73 281.6 485 38.8
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 5.9e-72 276.9 676 31.1
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 9.7e-67 259.6 273 48.0
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 5.9e-64 250.4 139 80.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 2.9e-63 248.1 434 37.3
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 3.1e-57 228.0 450 35.8
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 8.5e-55 219.9 722 27.6
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.6e-53 214.5 191 53.4
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-46 190.3 159 55.3
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.6e-45 189.1 106 81.1
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-45 187.6 176 55.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 3.0e-44 184.9 169 56.8
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.2e-43 183.0 546 28.9
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.7e-42 179.1 151 61.6
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 5.4e-41 174.1 106 77.4
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 9.2e-41 173.3 166 57.2
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 4.5e-40 171.0 343 31.8
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.6e-32 146.0 277 33.9
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.8e-28 132.5 123 56.9
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.6e-27 128.6 78 79.5
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 9.8e-27 126.7 89 64.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.3e-26 123.6 683 24.6
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.1e-25 123.2 84 70.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.2e-24 119.8 86 62.8
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-22 113.2 82 72.0
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.9e-22 112.5 301 31.6
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 7.8e-16 90.5 109 45.9
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.6e-15 87.0 216 34.7
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 1.2e-13 83.2 91 49.5
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 1.1e-12 80.1 63 57.1
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 2.2e-10 72.4 75 45.3
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.0e-08 64.3 71 43.7


User provided reference genes

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