Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 5.1e-301 1037.7 854 100.0
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 4.2e-295 1018.1 853 98.5
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 3.7e-283 978.4 854 91.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 5.6e-247 858.2 706 80.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 3.4e-244 849.0 707 80.9
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.8e-216 756.9 761 81.7
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 5.3e-213 745.3 707 73.1
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.5e-199 700.7 691 67.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.0e-191 673.7 672 67.3
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.7e-190 669.5 699 65.8
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 3.1e-189 666.4 627 69.5
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.7e-185 653.3 714 63.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 3.6e-185 652.9 695 68.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.3e-184 650.2 509 76.4
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 8.8e-184 648.3 689 65.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 2.2e-182 643.7 702 66.4
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.4e-181 641.0 710 62.0
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.2e-180 637.9 698 60.0
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.0e-180 637.1 630 64.9
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 5.9e-180 635.6 631 62.6
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 7.7e-180 635.2 725 62.5
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.9e-178 630.6 682 64.2
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.5e-178 630.2 690 61.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 3.2e-178 629.8 692 63.6
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 3.2e-178 629.8 691 63.7
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 9.4e-178 628.2 718 61.0
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.2e-177 627.9 707 63.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.2e-177 627.9 698 62.9
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.6e-177 627.5 500 72.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.1e-177 627.1 492 77.6
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.7e-177 626.7 546 68.3
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.7e-177 626.7 615 65.9
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.7e-177 626.7 629 67.2
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.0e-176 624.8 499 72.5
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.8e-176 624.0 639 64.5
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 4.0e-176 622.9 683 63.0
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 4.0e-176 622.9 691 62.5
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.5e-175 620.9 680 60.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.0e-175 620.5 623 66.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.4e-175 619.4 639 63.8
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 5.7e-175 619.0 643 64.5
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 9.7e-175 618.2 687 60.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.8e-174 615.9 731 62.4
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 8.2e-174 615.1 691 67.0
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-173 614.4 691 60.8
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.0e-173 612.1 666 65.0
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.0e-172 610.5 515 69.1
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 2.7e-172 610.1 624 63.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 2.7e-172 610.1 705 63.3
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.7e-172 610.1 683 62.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 3.5e-172 609.8 711 59.9
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 5.9e-172 609.0 682 61.6
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.9e-171 606.7 627 69.7
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.9e-170 604.0 671 61.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 5.5e-170 602.4 689 64.3
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 5.5e-170 602.4 695 62.7
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.2e-170 602.1 692 64.0
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-169 601.3 689 64.3
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.7e-169 599.4 689 64.2
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 8.0e-169 598.6 640 64.8
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 8.0e-169 598.6 687 64.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 2.3e-168 597.0 502 70.3
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.2e-167 594.7 513 67.8
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.2e-167 594.7 647 62.0
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 9.1e-165 585.1 498 69.1
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.0e-164 583.9 508 62.4
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.7e-164 583.6 502 70.1
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.7e-164 583.6 502 69.9
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.5e-162 577.8 507 68.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.9e-162 577.4 709 61.6
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.9e-162 577.4 625 63.7
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 7.2e-162 575.5 625 62.9
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 9.5e-162 575.1 548 65.3
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.0e-160 570.1 508 69.5
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 5.2e-160 569.3 540 63.0
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.2e-159 568.2 616 64.9
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 8.3e-158 562.0 508 68.9
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.4e-157 561.2 688 58.1
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.4e-157 561.2 540 63.9
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 3.5e-156 556.6 639 57.3
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 5.9e-156 555.8 701 55.9
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.3e-155 554.7 675 59.7
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 9.5e-154 548.5 503 61.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 3.6e-153 546.6 503 63.2
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.6e-153 546.6 689 57.9
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 4.7e-153 546.2 619 59.9
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 4.7e-153 546.2 542 60.0
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 5.2e-152 542.7 621 63.3
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 5.2e-152 542.7 713 57.5
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 9.8e-151 538.5 620 60.8
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 9.8e-151 538.5 620 60.8
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 9.8e-151 538.5 513 65.3
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 2.2e-150 537.3 693 57.9
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 2.9e-150 537.0 620 60.6
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 6.4e-150 535.8 628 56.8
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.3e-150 535.4 622 59.8
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.3e-147 528.1 517 67.1
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.7e-147 527.7 517 66.9
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.6e-145 520.0 501 62.5
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 3.7e-134 483.4 681 55.4
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 3.0e-115 420.6 559 56.0
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.9e-114 417.9 502 56.0
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 2.8e-113 414.1 505 54.5
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 4.0e-112 410.2 487 62.0
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 3.9e-107 393.7 520 59.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.4e-106 389.4 306 70.6
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 8.7e-99 365.9 326 66.6
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.8e-86 323.9 213 76.1
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 7.9e-84 316.2 494 47.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 4.8e-81 307.0 539 41.9
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 9.7e-74 282.7 373 60.9
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.8e-73 281.2 485 45.6
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.4e-71 274.2 485 44.7
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.0e-67 262.7 440 43.4
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.0e-66 258.5 339 62.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.3e-65 255.8 295 55.9
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.8e-65 254.6 355 62.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 5.9e-63 246.9 187 67.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.7e-57 228.8 276 58.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 6.3e-57 226.9 188 72.3
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.1e-56 226.1 292 47.6
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.0e-55 221.9 201 61.7
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 8.1e-20 103.6 88 54.5
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-19 101.7 85 58.8
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 5.2e-19 100.9 58 77.6
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.0e-18 99.0 152 47.4
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.9e-17 94.4 343 27.1
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.9e-16 92.4 367 30.8
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 4.1e-16 91.3 104 53.8
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-15 88.2 101 53.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 3.5e-15 88.2 69 62.3
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 7.8e-15 87.0 82 75.6
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 4.3e-13 81.3 104 51.0
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.1e-11 76.6 261 31.8
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 5.8e-10 70.9 78 71.8
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.7e-06 59.3 118 49.2
Lalb_Chr11g0067351 Lupinus albus HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 36.6
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 37.6
Lalb_Chr11g0067341 Lupinus albus HOM05D001023 ORTHO05D000912 3.0e-06 58.5 97 36.1
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 3.9e-06 58.2 103 36.9
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 3.9e-06 58.2 103 36.9
Glyma.06G135300 Glycine max HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 36.6
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 101 35.6
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 88 35.2
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 88 35.2
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 3.9e-06 58.2 101 35.6
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 3.9e-06 58.2 88 35.2
Medtr3g092510 Medicago truncatula HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 35.5
Phvul.009G046100 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 36.6
EL10Ac4g08496 Beta vulgaris HOM05D001023 ORTHO05D000912 5.1e-06 57.8 90 35.6
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 5.1e-06 57.8 43 69.8
Glyma.04G229400 Glycine max HOM05D001023 ORTHO05D000912 5.1e-06 57.8 93 35.5
Ah.04g163800 Amaranthus hybridus HOM05D001023 ORTHO05D000912 6.6e-06 57.4 90 37.8
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 35.5
AUR62043090 Chenopodium quinoa HOM05D001023 ORTHO05D000912 8.7e-06 57.0 90 35.6
Ca_16768_v3 Cicer arietinum L. HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 35.5
RcHm_v2.0_Chr7g0210041 Rosa chinensis HOM05D000142 ORTHO05D003173 8.7e-06 57.0 98 37.8
Sc03g0007750 Simmondsia chinensis HOM05D001023 ORTHO05D000912 8.7e-06 57.0 95 34.7
VMungo1309G1740 Vigna mungo HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 35.5


User provided reference genes

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