Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 7.2e-74 280.4 134 100.0
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.9e-68 260.8 134 93.3
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-54 216.5 120 86.7
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.4e-47 191.8 106 87.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.7e-43 179.5 126 63.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-43 179.5 126 63.5
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-42 176.4 126 61.1
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 5.6e-42 174.5 126 64.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.2e-42 174.1 120 63.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.5e-42 173.7 125 64.0
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.1e-41 172.6 126 61.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.8e-41 172.2 118 63.6
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-41 171.8 120 63.3
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 6.1e-41 171.0 122 60.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.0e-40 170.2 121 60.3
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.4e-40 169.9 125 59.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.8e-40 169.5 120 63.3
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.3e-40 169.1 126 59.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.0e-40 168.7 122 63.1
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.0e-40 168.7 126 59.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.0e-40 168.7 125 59.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.0e-40 168.3 122 59.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.0e-40 168.3 96 84.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.8e-40 167.5 121 62.8
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 6.8e-40 167.5 126 57.9
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.8e-40 167.5 126 57.9
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.2e-39 166.8 122 57.4
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.2e-39 166.8 122 57.4
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.2e-39 166.8 126 57.9
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.2e-39 166.8 122 57.4
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.5e-39 166.4 124 59.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-39 166.4 93 82.8
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.6e-39 165.6 120 59.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.4e-39 165.2 123 58.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 4.4e-39 164.9 120 58.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.4e-39 164.9 122 56.6
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.4e-39 164.9 122 58.2
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 5.7e-39 164.5 122 59.0
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 5.7e-39 164.5 126 56.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.7e-39 164.5 126 56.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 7.5e-39 164.1 119 60.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.5e-39 164.1 122 58.2
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 7.5e-39 164.1 127 57.5
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 9.8e-39 163.7 121 59.5
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 9.8e-39 163.7 123 57.7
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.8e-39 163.7 126 56.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-38 163.3 122 57.4
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.3e-38 163.3 125 58.4
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.7e-38 162.9 128 57.8
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.2e-38 162.5 122 55.7
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.2e-38 162.5 122 55.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.2e-38 162.5 122 55.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.9e-38 162.2 127 55.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 4.9e-38 161.4 122 54.9
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 4.9e-38 161.4 122 59.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.9e-38 161.4 120 57.5
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 6.4e-38 161.0 122 55.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.4e-38 161.0 118 60.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 8.3e-38 160.6 127 55.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-37 160.2 120 59.2
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.1e-37 160.2 122 58.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.1e-37 160.2 125 58.4
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.8e-37 159.5 120 55.0
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.8e-37 159.5 118 59.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.4e-37 159.1 124 58.9
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.4e-37 159.1 124 58.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.2e-37 158.7 120 59.2
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.1e-37 158.3 120 56.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 4.1e-37 158.3 127 56.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.4e-37 157.9 120 57.5
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.4e-37 157.9 121 55.4
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.4e-37 157.9 120 56.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.0e-37 157.5 120 57.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 9.2e-37 157.1 136 53.7
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 9.2e-37 157.1 124 55.6
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.2e-36 156.8 111 62.2
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.6e-36 156.4 125 55.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.6e-36 156.4 120 57.5
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.0e-36 156.0 123 56.9
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.0e-36 156.0 124 53.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.7e-36 155.6 117 59.0
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 2.7e-36 155.6 120 57.5
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.7e-36 155.6 122 54.1
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.7e-36 155.6 127 54.3
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.6e-36 154.8 122 57.4
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.6e-36 154.8 113 59.3
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 5.9e-36 154.5 123 56.1
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 5.9e-36 154.5 121 57.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 7.8e-36 154.1 122 57.4
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.8e-36 154.1 125 55.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.8e-36 154.1 125 55.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 7.8e-36 154.1 122 57.4
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.0e-35 153.7 119 56.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.0e-35 153.7 125 53.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-35 152.9 127 54.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.7e-35 152.9 126 51.6
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-35 152.9 90 75.6
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.7e-35 152.9 121 57.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 2.3e-35 152.5 122 54.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.3e-35 152.5 125 54.4
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.3e-35 152.5 124 56.5
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.9e-35 152.1 118 55.1
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.9e-35 152.1 124 51.6
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 3.9e-35 151.8 128 53.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.0e-35 151.4 122 56.6
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 6.6e-35 151.0 125 52.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 6.6e-35 151.0 125 52.8
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.6e-35 151.0 121 57.9
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 6.6e-35 151.0 122 57.4
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 8.6e-35 150.6 125 53.6
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.1e-34 150.2 122 54.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-34 149.4 127 52.0
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-34 149.4 127 52.0
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-34 149.4 127 52.0
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.9e-34 149.4 127 52.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.9e-34 149.4 125 53.6
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 2.5e-34 149.1 121 57.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 7.3e-34 147.5 122 54.1
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 7.3e-34 147.5 118 53.4
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-34 147.5 115 55.7
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 9.5e-34 147.1 115 54.8
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-33 146.4 128 51.6
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-33 146.4 128 50.8
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-33 146.4 128 51.6
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-33 146.4 128 51.6
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.6e-33 146.4 128 52.3
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.7e-33 144.8 123 52.0
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.8e-32 142.9 115 54.8
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.8e-32 142.9 120 50.8
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.8e-32 142.9 120 50.8
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 4.0e-32 141.7 113 53.1
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.0e-32 141.7 117 53.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-31 140.2 110 56.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.0e-31 139.4 115 55.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.4e-31 138.7 130 50.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 5.8e-31 137.9 112 53.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.3e-30 136.7 120 50.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.7e-30 136.3 112 53.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.7e-30 135.2 118 50.0
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.7e-30 135.2 79 82.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.4e-29 132.5 123 49.6
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.8e-28 127.5 120 48.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-26 123.6 74 73.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.5e-26 122.5 122 43.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.5e-26 122.5 123 44.7
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.1e-25 119.4 93 57.0
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.3e-24 115.9 111 47.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-23 113.6 125 44.8
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-23 113.6 125 44.8
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.0e-23 112.8 122 43.4
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 2.0e-23 112.8 128 42.2
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.6e-23 112.5 119 45.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.4e-23 112.1 117 44.4
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 5.4e-21 104.8 118 43.2
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 5.4e-21 104.8 110 43.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 9.2e-21 104.0 125 40.0
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.7e-20 102.4 126 41.3
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.7e-20 102.4 75 56.0
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.3e-19 99.4 118 42.4
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.3e-19 99.4 110 42.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 8.6e-19 97.4 106 40.6
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.3e-18 95.5 87 54.0
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.5e-18 94.0 107 42.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 6.2e-17 91.3 111 38.7
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 5.8e-15 84.7 126 35.7
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.7e-11 73.2 48 60.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 3.9e-11 72.0 99 35.4
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 6.2e-09 64.7 122 32.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 2.6e-07 59.3 94 37.2
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 4.4e-07 58.5 42 57.1


User provided reference genes

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