Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g029740 Solanum pennellii HOM05D006806 ORTHO05D008448 2.3e-153 545.4 260 100.0
Solyc09g074920.3 Solanum lycopersicum HOM05D006806 ORTHO05D008448 2.8e-151 538.5 260 98.8
Nitab4.5_0000619g0080 Nicotiana tabacum HOM05D006806 ORTHO05D008448 7.8e-125 450.7 259 82.2
CAN.G339.30 Capsicum annuum HOM05D006806 ORTHO05D008448 2.3e-121 439.1 261 81.6
Peaxi162Scf00067g02523 Petunia axillaris HOM05D006806 ORTHO05D008448 2.5e-115 419.1 260 77.7
PGSC0003DMG400011394 Solanum tuberosum HOM05D006806 ORTHO05D008448 2.1e-114 416.0 260 78.8
Nitab4.5_0003901g0060 Nicotiana tabacum HOM05D006806 ORTHO05D008448 2.3e-108 396.0 259 75.3
CSS0020680 Camellia sinensis var. sinensis HOM05D006806 ORTHO05D008448 8.7e-92 340.9 270 61.1
Oeu046692.2 Olea europaea HOM05D006806 ORTHO05D008448 9.9e-88 327.4 264 62.5
TAR365G0408 Trochodendron aralioides HOM05D006806 ORTHO05D008448 1.5e-83 313.5 265 59.2
Sabra14G0097600 Salix brachista HOM05D006806 ORTHO05D008448 2.5e-83 312.8 262 58.4
MSTRG.21623 Avicennia marina HOM05D006806 ORTHO05D008448 5.6e-83 311.6 264 59.1
GSVIVG01027979001 Vitis vinifera HOM05D006806 ORTHO05D008448 9.6e-83 310.8 269 55.8
Actinidia24336 Actinidia chinensis HOM05D006806 ORTHO05D008448 1.6e-82 310.1 264 57.6
Manes.05G063800 Manihot esculenta HOM05D006806 ORTHO05D008448 1.6e-82 310.1 262 59.5
Atru.chr5.1178 Acer truncatum HOM05D006806 ORTHO05D008448 4.8e-82 308.5 260 58.8
DCAR_002818 Daucus carota HOM05D006806 ORTHO05D008448 5.3e-81 305.1 257 58.4
Lsat_1_v5_gn_9_1100 Lactuca sativa HOM05D006806 ORTHO05D008448 5.3e-81 305.1 259 60.2
Rhsim13G0012300 Rhododendron simsii HOM05D006806 ORTHO05D008448 5.3e-81 305.1 264 57.6
Haze_04900 Corylus avellana HOM05D006806 ORTHO05D008448 1.2e-80 303.9 269 57.6
Cfa005945 Carpinus fangiana HOM05D006806 ORTHO05D008448 1.5e-80 303.5 269 57.6
Potri.014G131200 Populus trichocarpa HOM05D006806 ORTHO05D008448 2.0e-80 303.1 259 57.5
Aqoxy5G00723 Aquilegia oxysepala HOM05D006806 ORTHO05D008448 3.4e-80 302.4 262 59.5
Migut.D00198 Erythranthe guttata HOM05D006806 ORTHO05D008448 3.4e-80 302.4 273 59.3
COL.COLO4_23371 Corchorus olitorius HOM05D006806 ORTHO05D008448 5.8e-80 301.6 268 56.3
HanXRQChr15g0465711 Helianthus annuus HOM05D006806 ORTHO05D008448 5.8e-80 301.6 264 59.1
Hma1.2p1_0209F.1_g088560 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 1.7e-79 300.1 265 55.8
Lj1C32T0 Lonicera japonica HOM05D006806 ORTHO05D008448 2.9e-79 299.3 304 52.6
MELO3C017969.2 Cucumis melo HOM05D006806 ORTHO05D008448 4.9e-79 298.5 267 55.8
Duzib133G0508 Durio zibethinus HOM05D006806 ORTHO05D008448 4.9e-79 298.5 264 56.4
ClCG10G010640 Citrullus lanatus HOM05D006806 ORTHO05D008448 1.4e-78 297.0 267 55.1
Ciclev10021759m.g Citrus clementina HOM05D006806 ORTHO05D008448 2.1e-77 293.1 262 56.1
Eucgr.H01159 Eucalyptus grandis HOM05D006806 ORTHO05D008448 3.5e-77 292.4 260 56.9
Prupe.8G258600 Prunus persica HOM05D006806 ORTHO05D008448 7.9e-77 291.2 264 57.2
TWI59G0641 Tripterygium wilfordii HOM05D006806 ORTHO05D008448 1.3e-76 290.4 267 56.2
vmacro02466 Vaccinium macrocarpon HOM05D006806 ORTHO05D008448 3.0e-76 289.3 290 50.3
SalBow3G1555 Salvia bowleyana HOM05D006806 ORTHO05D008448 3.9e-76 288.9 284 52.5
Thecc.01G297500 Theobroma cacao HOM05D006806 ORTHO05D008448 3.9e-76 288.9 262 56.5
QL12p027175 Quercus lobata HOM05D006806 ORTHO05D008448 6.7e-76 288.1 263 56.3
MD11G1304900 Malus domestica HOM05D006806 ORTHO05D008448 1.5e-75 287.0 260 58.8
Hund05413 Selenicereus undatus HOM05D006806 ORTHO05D008448 1.5e-75 287.0 309 49.8
CiPaw.07G106700 Carya illinoinensis HOM05D006806 ORTHO05D008448 4.3e-75 285.4 215 62.8
AUR62008620 Chenopodium quinoa HOM05D006806 ORTHO05D008448 7.4e-75 284.6 271 54.2
Gorai.008G011300 Gossypium raimondii HOM05D006806 ORTHO05D008448 9.7e-75 284.3 264 54.5
Cpa.g.sc9.212 Carica papaya HOM05D006806 ORTHO05D008448 1.3e-74 283.9 267 55.1
RcHm_v2.0_Chr6g0293671 Rosa chinensis HOM05D006806 ORTHO05D008448 1.3e-74 283.9 270 57.4
Gohir.D12G011300 Gossypium hirsutum HOM05D006806 ORTHO05D008448 1.6e-74 283.5 269 53.9
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 2.1e-74 283.1 259 54.1
PGR119G2452 Punica granatum HOM05D006806 ORTHO05D008448 3.7e-74 282.3 275 53.1
FAN27G1603 Fragaria x ananassa HOM05D006806 ORTHO05D008448 4.8e-74 282.0 267 57.3
PGR119G0665 Punica granatum HOM05D006806 ORTHO05D008448 8.2e-74 281.2 269 53.9
FAN20G0869 Fragaria x ananassa HOM05D006806 ORTHO05D008448 1.1e-73 280.8 267 57.3
ATR0796G300 Amborella trichopoda HOM05D006806 ORTHO05D008448 1.8e-73 280.0 272 52.6
ECA247G0015 Erigeron canadensis HOM05D006806 ORTHO05D008448 4.1e-73 278.9 264 54.9
EL10Ac7g17440 Beta vulgaris HOM05D006806 ORTHO05D008448 6.9e-73 278.1 296 49.7
Nn3g21440 Nelumbo nucifera HOM05D006806 ORTHO05D008448 1.5e-72 276.9 258 56.2
CANSAT25G0048 Cannabis sativa HOM05D006806 ORTHO05D008448 2.6e-72 276.2 264 54.5
FvH4_2g25440 Fragaria vesca HOM05D006806 ORTHO05D008448 2.6e-72 276.2 266 56.0
FAN24G3039 Fragaria x ananassa HOM05D006806 ORTHO05D008448 5.9e-72 275.0 267 56.6
CANSAT25G1656 Cannabis sativa HOM05D006806 ORTHO05D008448 7.6e-72 274.6 265 54.7
FAN15G1766 Fragaria x ananassa HOM05D006806 ORTHO05D008448 7.6e-72 274.6 275 55.6
Os11g0657200 Oryza sativa ssp. japonica HOM05D006806 ORTHO05D008448 7.6e-72 274.6 256 54.3
FAN15G0699 Fragaria x ananassa HOM05D006806 ORTHO05D008448 1.3e-71 273.9 266 56.8
Zm00001eb115680 Zea mays HOM05D006806 ORTHO05D008448 5.5e-70 268.5 257 54.9
Sp6g02400 Schrenkiella parvula HOM05D006806 ORTHO05D008448 1.2e-69 267.3 256 55.5
AL6G50560 Arabidopsis lyrata HOM05D006806 ORTHO05D008448 2.1e-69 266.5 249 57.0
AT4G02485 Arabidopsis thaliana HOM05D006806 ORTHO05D008448 5.1e-68 261.9 256 56.2
Lalb_Chr21g0312551 Lupinus albus HOM05D006806 ORTHO05D008448 8.7e-68 261.2 256 53.1
BcaB01g02036 Brassica carinata HOM05D006806 ORTHO05D008448 1.1e-67 260.8 255 55.7
THA.LOC104801266 Tarenaya hassleriana HOM05D006806 ORTHO05D008448 1.1e-67 260.8 204 63.2
Thhalv10028943m.g Eutrema salsugineum HOM05D006806 ORTHO05D008448 4.3e-67 258.8 249 54.6
BcaNung04058 Brassica carinata HOM05D006806 ORTHO05D008448 5.7e-67 258.5 255 54.5
BolC9t53133H Brassica oleracea HOM05D006806 ORTHO05D008448 5.7e-67 258.5 255 54.5
BraA09t35844Z Brassica rapa HOM05D006806 ORTHO05D008448 5.7e-67 258.5 255 54.1
Carub.0006s3464 Capsella rubella HOM05D006806 ORTHO05D008448 1.3e-66 257.3 256 53.1
A09p01940 Brassica napus HOM05D006806 ORTHO05D008448 1.7e-66 256.9 255 54.1
C09p02030 Brassica napus HOM05D006806 ORTHO05D008448 2.4e-65 253.1 255 54.5
Cc01_g20670 Coffea canephora HOM05D006806 ORTHO05D008448 9.1e-65 251.1 186 65.1
Dinv19713 Davidia involucrata HOM05D006806 ORTHO05D008448 3.8e-63 245.7 178 64.6
HPP92_014223 Vanilla planifolia HOM05D006806 ORTHO05D008448 3.8e-63 245.7 257 51.4
Phvul.008G264300 Phaseolus vulgaris HOM05D006806 ORTHO05D008448 3.6e-61 239.2 256 50.8
Ca_06294_v3 Cicer arietinum L. HOM05D006806 ORTHO05D008448 1.0e-60 237.7 252 50.4
VMungo0647G0123 Vigna mungo HOM05D006806 ORTHO05D008448 1.4e-60 237.3 206 57.8
Glyma.14G026500 Glycine max HOM05D006806 ORTHO05D008448 1.8e-60 236.9 257 50.6
Psat2g014480 Pisum sativum HOM05D006806 ORTHO05D008448 1.1e-59 234.2 210 56.2
Aa31LG5G2120 Aethionema arabicum HOM05D006806 ORTHO05D008448 1.5e-59 233.8 308 43.2
MBI19_g29223_MAGBIO Magnolia biondii HOM05D006806 ORTHO05D008448 3.7e-58 229.2 183 61.7
Hma1.2p1_0209F.1_g088570 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 1.1e-57 227.6 171 62.6
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 4.5e-56 222.2 205 53.2
arahy.Tifrunner.gnm1.ann1.68R93N Arachis hypogaea HOM05D006806 ORTHO05D008448 1.7e-55 220.3 205 52.7
LjContig00310g0013469 Lotus japonicus HOM05D006806 ORTHO05D008448 1.7e-55 220.3 241 50.2
CARHR250790 Cardamine hirsuta HOM05D006806 ORTHO05D008448 5.0e-55 218.8 173 63.0
AagrBONN_evm.TU.Sc2ySwM_117.167 Anthoceros agrestis HOM05D006806 ORTHO05D008448 1.4e-54 217.2 252 48.8
Medtr5g091920 Medicago truncatula HOM05D006806 ORTHO05D008448 1.4e-54 217.2 256 47.7
Lj1A1G13 Lonicera japonica HOM05D006806 ORTHO05D008448 3.9e-52 209.1 277 46.2
AUR62033171 Chenopodium quinoa HOM05D006806 ORTHO05D008448 7.4e-51 204.9 235 46.4
Pp3c19_16790 Physcomitrium patens HOM05D006806 ORTHO05D008448 7.4e-51 204.9 213 49.3
SMO364G0875 Selaginella moellendorffii HOM05D006806 ORTHO05D008448 8.2e-50 201.4 258 43.0
Mapoly0003s0075 Marchantia polymorpha HOM05D006806 ORTHO05D008448 4.5e-48 195.7 254 42.1
BcaNung04061 Brassica carinata HOM05D000714 ORTHO05D008448 9.4e-46 188.0 165 59.4
Sed0021826 Sechium edule HOM05D006806 ORTHO05D008448 8.0e-45 184.9 267 40.1
CDE02G3512 Ceratophyllum demersum HOM05D006806 ORTHO05D008448 5.2e-44 182.2 148 57.4
Gohir.A12G010900 Gossypium hirsutum HOM05D006806 ORTHO05D008448 1.1e-41 174.5 266 39.8
CsaV3_4G000670 Cucumis sativus L. HOM05D006806 ORTHO05D008448 2.0e-35 153.7 161 47.8
Sc05g0004190 Simmondsia chinensis HOM05D006806 ORTHO05D008448 4.4e-35 152.5 162 50.0
unitig_0.g1177 Utricularia gibba HOM05D006806 ORTHO05D008448 7.0e-33 145.2 104 66.3
SEGI_33486 Sequoiadendron giganteum HOM05D006806 ORTHO05D008448 8.0e-29 131.7 163 41.7
HPP92_026483 Vanilla planifolia HOM05D006806 ORTHO05D008448 4.1e-25 119.4 166 43.4
Duzib116G0666 Durio zibethinus HOM05D006806 ORTHO05D008448 2.0e-24 117.1 94 58.5
CANSAT25G2513 Cannabis sativa HOM05D006806 ORTHO05D008448 4.5e-24 115.9 94 61.7
MCO10G232 Micromonas commoda HOM05D006806 ORTHO05D008448 7.8e-16 88.6 208 30.8
BcaB02g10829 Brassica carinata HOM05D006806 ORTHO05D008448 1.0e-15 88.2 157 37.6
Cc01_g20680 Coffea canephora HOM05D006806 ORTHO05D008448 1.1e-14 84.7 81 53.1
Hund11072 Selenicereus undatus HOM05D007105 ORTHO05D009304 1.1e-12 78.2 217 27.2
PRCOL_00002936 Prasinoderma coloniale HOM05D006806 ORTHO05D008448 4.0e-12 76.3 221 27.6
Potri.003G106300 Populus trichocarpa HOM05D007105 ORTHO05D009304 8.9e-12 75.1 217 28.6
Sc22g0002220 Simmondsia chinensis HOM05D007105 ORTHO05D009304 1.2e-11 74.7 218 27.5
Aqoxy3G04039 Aquilegia oxysepala HOM05D007105 ORTHO05D009304 3.4e-11 73.2 208 29.3
Medtr5g026030 Medicago truncatula HOM05D007105 ORTHO05D009304 9.8e-11 71.6 221 29.0
Psat2g144520 Pisum sativum HOM05D007105 ORTHO05D009304 9.8e-11 71.6 221 28.5
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 1.3e-10 71.2 231 26.8
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 1.3e-10 71.2 232 25.9
THA.LOC104798532 Tarenaya hassleriana HOM05D007105 ORTHO05D009304 1.3e-10 71.2 241 27.0
MBI19_g29222_MAGBIO Magnolia biondii HOM05D006806 ORTHO05D008448 1.7e-10 70.9 84 44.0
Glyma.14G026566 Glycine max HOM05D006806 ORTHO05D008448 2.2e-10 70.5 53 58.5
Phvul.002G123600 Phaseolus vulgaris HOM05D007105 ORTHO05D009304 2.2e-10 70.5 215 26.5
Cre16.g695851 Chlamydomonas reinhardtii HOM05D006806 ORTHO05D008448 3.7e-10 69.7 96 41.7
QL12p002830 Quercus lobata HOM05D007105 ORTHO05D009304 3.7e-10 69.7 226 26.1
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 3.7e-10 69.7 235 27.7
arahy.Tifrunner.gnm1.ann1.C0VXQN Arachis hypogaea HOM05D007105 ORTHO05D009304 6.4e-10 68.9 221 27.6
arahy.Tifrunner.gnm1.ann1.E4PV4B Arachis hypogaea HOM05D007105 ORTHO05D009304 6.4e-10 68.9 221 27.6
MSTRG.11847 Avicennia marina HOM05D007105 ORTHO05D009304 8.3e-10 68.6 217 25.3
Oeu031946.1 Olea europaea HOM05D007105 ORTHO05D009304 1.1e-09 68.2 231 22.9
Lj2g0014172 Lotus japonicus HOM05D007105 ORTHO05D009304 1.4e-09 67.8 219 27.4
SalBow4G3195 Salvia bowleyana HOM05D007105 ORTHO05D009304 1.4e-09 67.8 262 28.2
TPR.G28495 Trifolium pratense HOM05D007105 ORTHO05D009304 1.4e-09 67.8 220 26.4
Cfa012630 Carpinus fangiana HOM05D007105 ORTHO05D009304 1.9e-09 67.4 234 25.6
Lsat_1_v5_gn_6_17400 Lactuca sativa HOM05D007105 ORTHO05D009304 1.9e-09 67.4 199 24.6
Haze_08036 Corylus avellana HOM05D007105 ORTHO05D009304 4.1e-09 66.2 191 26.7
Migut.A00485 Erythranthe guttata HOM05D007105 ORTHO05D009304 4.1e-09 66.2 222 25.2
RcHm_v2.0_Chr7g0215051 Rosa chinensis HOM05D007105 ORTHO05D009304 4.1e-09 66.2 218 26.1
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 5.4e-09 65.9 216 26.4
AUR62010501 Chenopodium quinoa HOM05D007105 ORTHO05D009304 5.4e-09 65.9 218 24.8
FvH4_5g24670 Fragaria vesca HOM05D007105 ORTHO05D009304 5.4e-09 65.9 237 26.2
FAN13G0608 Fragaria x ananassa HOM05D007105 ORTHO05D009304 5.4e-09 65.9 237 26.2
FAN18G4245 Fragaria x ananassa HOM05D007105 ORTHO05D009304 5.4e-09 65.9 237 26.2
Lalb_Chr05g0215271 Lupinus albus HOM05D007105 ORTHO05D009304 5.4e-09 65.9 234 25.6
Oeu047792.1 Olea europaea HOM05D007105 ORTHO05D009304 5.4e-09 65.9 231 22.5
VMungo1215G3143 Vigna mungo HOM05D007105 ORTHO05D009304 5.4e-09 65.9 188 27.1
AL1G49460 Arabidopsis lyrata HOM05D007105 ORTHO05D009304 7.0e-09 65.5 224 24.1
COL.COLO4_16732 Corchorus olitorius HOM05D007105 ORTHO05D009304 7.0e-09 65.5 217 25.8
CsaV3_4G037900 Cucumis sativus L. HOM05D007105 ORTHO05D009304 1.2e-08 64.7 218 24.3
AT1G31600 Arabidopsis thaliana HOM05D007105 ORTHO05D009304 1.6e-08 64.3 224 24.1
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 1.6e-08 64.3 223 25.6
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 1.6e-08 64.3 223 25.6
DCAR_000711 Daucus carota HOM05D007105 ORTHO05D009304 1.6e-08 64.3 203 27.1
FAN04G2788 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.6e-08 64.3 232 25.4
TWI60G0782 Tripterygium wilfordii HOM05D007105 ORTHO05D009304 1.6e-08 64.3 247 25.1
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 2.1e-08 63.9 223 25.1
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 2.1e-08 63.9 223 25.1
FAN08G0498 Fragaria x ananassa HOM05D007105 ORTHO05D009304 2.1e-08 63.9 233 26.2
Hma1.2p1_0294F.1_g116480 Hydrangea macrophylla HOM05D007105 ORTHO05D009304 2.1e-08 63.9 216 25.0
Sabra03G0073100 Salix brachista HOM05D007105 ORTHO05D009304 2.1e-08 63.9 224 27.2
Zm00001eb071740 Zea mays HOM05D007105 ORTHO05D009304 2.1e-08 63.9 218 26.1
HPP92_014403 Vanilla planifolia HOM05D007105 ORTHO05D009304 2.7e-08 63.5 226 25.2
Aa31LG2G14440 Aethionema arabicum HOM05D007105 ORTHO05D009304 3.5e-08 63.2 216 25.9
AUR62017399 Chenopodium quinoa HOM05D007105 ORTHO05D009304 3.5e-08 63.2 216 25.0
unitig_748.g8154 Utricularia gibba HOM05D007105 ORTHO05D009304 3.5e-08 63.2 224 26.3
CDE12G0320 Ceratophyllum demersum HOM05D007105 ORTHO05D009304 4.6e-08 62.8 218 26.1
MELO3C010538.2 Cucumis melo HOM05D007105 ORTHO05D009304 7.8e-08 62.0 225 24.9
Nn1g09319 Nelumbo nucifera HOM05D007105 ORTHO05D009304 7.8e-08 62.0 231 22.5
Prupe.5G014800 Prunus persica HOM05D007105 ORTHO05D009304 7.8e-08 62.0 217 24.4
CANSAT35G0139 Cannabis sativa HOM05D007105 ORTHO05D009304 1.0e-07 61.6 231 24.2
MD06G1012100 Malus domestica HOM05D007105 ORTHO05D009304 1.0e-07 61.6 221 26.2
SGA_v2.0_scaffold89G27361 Striga asiatica HOM05D007105 ORTHO05D009304 1.0e-07 61.6 236 23.7
AagrBONN_evm.TU.Sc2ySwM_344.1706 Anthoceros agrestis HOM05D007105 ORTHO05D009304 1.3e-07 61.2 162 31.5
Thecc.03G321700 Theobroma cacao HOM05D007105 ORTHO05D009304 1.3e-07 61.2 216 26.4
TAR375G0424 Trochodendron aralioides HOM05D007105 ORTHO05D009304 1.3e-07 61.2 230 23.5
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 1.7e-07 60.8 232 25.4
Nitab4.5_0001159g0020 Nicotiana tabacum HOM05D007105 ORTHO05D009304 2.3e-07 60.5 126 32.5
PSO063G0027 Papaver somniferum HOM05D007105 ORTHO05D009304 2.3e-07 60.5 234 23.9
FAN13G0641 Fragaria x ananassa HOM05D007105 ORTHO05D009304 8.6e-07 58.5 132 31.1
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 1.1e-06 58.2 115 32.2
PGR042G1426 Punica granatum HOM05D007105 ORTHO05D009304 1.1e-06 58.2 219 25.1
Ah.02g116320 Amaranthus hybridus HOM05D007105 ORTHO05D009304 2.5e-06 57.0 121 31.4
BcaNung04059 Brassica carinata HOM05D006806 ORTHO05D008448 4.3e-06 56.2 86 38.4


User provided reference genes

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