Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 0.0e+00 1773.1 935 100.0
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 0.0e+00 1758.8 935 99.3
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 0.0e+00 1513.4 937 86.3
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 0.0e+00 1460.3 936 84.3
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 0.0e+00 1426.8 937 83.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 0.0e+00 1261.1 921 76.7
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.5e-282 976.5 980 58.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 2.7e-276 955.7 938 58.8
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.4e-256 889.4 927 56.5
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 7.6e-255 884.4 923 55.0
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 6.4e-254 881.3 943 54.9
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 9.6e-250 867.5 929 53.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 8.1e-249 864.4 929 53.7
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 5.3e-248 861.7 945 54.9
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.4e-247 859.0 929 53.6
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.5e-247 858.6 938 54.5
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.4e-245 853.6 945 55.3
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.5e-244 849.0 927 55.0
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 4.6e-244 848.6 1004 53.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.3e-243 847.0 929 53.4
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 5.1e-243 845.1 960 52.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 4.3e-242 842.0 951 52.9
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 9.6e-242 840.9 926 52.3
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 9.0e-240 834.3 951 52.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 7.6e-239 831.2 975 52.7
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.2e-238 829.7 955 52.3
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.8e-238 828.9 957 52.1
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 6.0e-236 821.6 950 52.6
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 2.3e-235 819.7 919 51.6
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.3e-234 815.5 990 49.9
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 3.1e-232 809.3 990 49.8
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 3.1e-232 809.3 990 50.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 4.1e-232 808.9 976 50.1
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.3e-232 808.5 938 52.2
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.6e-231 806.2 990 49.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.4e-231 805.8 928 52.5
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.0e-230 804.3 935 51.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.3e-230 803.9 951 52.2
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.5e-229 799.7 990 49.3
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.7e-228 796.2 937 50.7
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 3.9e-227 792.3 930 51.1
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.1e-227 792.0 1013 48.2
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.4e-224 783.9 931 54.1
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.1e-224 782.7 1015 48.7
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 6.9e-224 781.6 833 55.2
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.9e-222 776.2 945 49.4
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.9e-221 773.5 945 50.2
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 5.5e-221 771.9 941 50.4
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.1e-218 764.2 965 49.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.2e-217 760.0 941 50.2
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.1e-216 757.7 967 47.9
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 6.9e-216 755.0 858 53.6
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 3.4e-215 752.7 968 47.6
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.2e-214 750.0 843 53.3
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 3.2e-213 746.1 968 47.1
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 7.2e-213 745.0 960 48.0
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.6e-212 742.7 960 47.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.0e-211 741.1 940 48.2
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-209 734.2 875 51.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.1e-208 731.1 948 47.2
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.2e-206 723.4 945 46.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 4.2e-205 719.2 1009 49.1
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.1e-204 716.8 919 47.9
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 4.0e-203 712.6 835 51.7
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 5.2e-203 712.2 950 46.5
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.1e-200 701.4 968 45.6
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 3.0e-195 686.4 951 46.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 3.0e-195 686.4 944 46.2
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.4e-194 682.9 978 44.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.4e-194 682.6 1085 42.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 4.4e-194 682.6 915 47.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 4.4e-194 682.6 961 43.6
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.8e-192 677.2 925 46.3
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 9.1e-192 674.9 920 46.5
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.7e-191 673.3 942 44.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-190 671.0 962 44.5
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 2.9e-190 669.8 811 49.9
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 2.1e-188 663.7 928 44.6
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 3.6e-188 662.9 922 46.1
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 6.1e-188 662.1 780 50.9
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 6.1e-188 662.1 1003 44.1
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.6e-186 656.8 898 46.5
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.6e-186 656.8 974 43.3
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.4e-184 650.2 932 45.4
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.7e-183 646.7 740 52.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 5.9e-183 645.6 785 50.4
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.5e-181 640.2 912 45.1
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 3.0e-179 633.3 1002 42.6
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 4.0e-179 632.9 1004 42.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.3e-174 617.8 1050 41.2
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.6e-172 610.9 950 44.7
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 8.9e-171 605.1 780 49.7
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 4.7e-164 582.8 965 42.0
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 5.4e-160 569.3 926 43.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.5e-157 560.5 932 40.9
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 4.7e-156 556.2 930 41.6
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.1e-155 555.1 948 41.4
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.2e-154 551.6 931 41.2
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 7.6e-154 548.9 929 40.5
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.9e-152 544.3 927 41.1
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.9e-152 544.3 941 40.8
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.4e-152 543.9 928 40.4
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 5.4e-152 542.7 927 39.9
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 5.4e-152 542.7 928 40.2
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 9.2e-152 542.0 580 54.3
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.6e-151 541.2 927 39.9
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.6e-151 541.2 550 56.4
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-149 534.6 651 49.5
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.9e-149 534.3 935 41.6
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.9e-145 520.4 998 38.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 6.9e-139 499.2 541 52.5
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-138 498.4 555 51.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 6.4e-129 466.1 1011 35.1
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.9e-120 438.0 755 40.7
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.3e-118 431.8 757 39.5
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.3e-116 425.2 759 40.3
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 8.2e-116 422.5 602 44.2
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.0e-113 413.3 983 33.6
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 6.3e-108 396.4 767 38.9
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 4.1e-107 393.7 993 32.8
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.9e-105 387.5 528 45.1
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 8.5e-105 386.0 528 47.0
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.9e-104 384.8 786 37.3
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.2e-103 382.1 369 60.2
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.6e-103 381.7 588 43.0
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.7e-103 380.9 554 43.5
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 2.7e-103 380.9 485 47.6
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 5.7e-101 373.2 786 37.5
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 5.2e-94 350.1 402 52.0
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.1e-93 349.0 1029 30.8
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 2.4e-91 341.3 552 42.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.8e-86 322.8 1065 27.6
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.7e-85 319.3 268 63.8
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.1e-83 315.8 611 39.1
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.9e-81 307.8 286 57.0
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 3.4e-77 294.3 337 51.3
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.3e-68 263.5 685 33.3
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 4.5e-66 257.3 250 56.0
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.4e-62 245.7 258 53.5
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.8e-59 235.3 343 46.6
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 4.9e-52 210.7 380 40.3
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 8.3e-52 209.9 378 37.3
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.4e-51 209.1 368 38.6
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.3e-49 201.8 489 35.0
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 9.8e-45 186.4 186 58.1
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.9e-44 184.9 291 41.6
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 4.3e-40 171.0 363 35.0
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.1e-39 168.7 152 56.6
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.7e-39 167.5 330 38.5
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.0e-38 164.5 280 44.3
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.0e-38 164.5 229 49.8
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.9e-38 163.3 205 52.2
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.8e-30 139.0 172 48.3
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.4e-28 130.2 243 41.2
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-26 125.9 226 41.6
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.7e-26 125.2 181 45.3
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.7e-26 125.2 196 45.4
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.5e-24 119.4 178 43.8
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.8e-22 112.5 558 26.5
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-21 109.8 98 63.3
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.5e-21 109.4 227 38.3
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.9e-20 105.1 156 42.3
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 2.9e-20 105.1 124 49.2
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.9e-18 97.1 192 38.5
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.1e-16 93.2 190 36.8
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.5e-16 92.8 117 51.3
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 5.6e-16 90.9 83 60.2
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 3.1e-14 85.1 76 55.3
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-13 81.3 172 34.3
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.3e-12 79.7 158 33.5
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 2.2e-12 79.0 95 42.1
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.4e-11 76.3 182 37.4
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.7e-10 72.0 98 41.8
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 6.0e-10 70.9 179 31.8
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 7.9e-10 70.5 97 41.2
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-08 66.2 95 42.1
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 2.5e-08 65.5 75 41.3
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.3e-08 65.1 77 46.8
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 4.3e-08 64.7 98 44.9
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 5.6e-08 64.3 94 40.4
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 5.3e-06 57.8 111 34.2


User provided reference genes

Program Settings