Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 4.2e-187 657.9 338 100.0
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 2.3e-185 652.1 338 98.2
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 3.3e-176 621.7 338 95.0
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 2.7e-162 575.5 338 88.2
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.0e-161 573.5 342 87.7
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 8.2e-159 563.9 342 87.1
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 6.1e-154 547.7 339 83.5
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 4.3e-115 418.7 326 68.1
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 4.0e-113 412.1 347 63.4
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 4.0e-113 412.1 342 63.7
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 1.5e-112 410.2 343 65.9
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 2.0e-112 409.8 344 63.4
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.1e-110 404.1 345 62.0
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 2.4e-110 402.9 346 63.3
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 5.4e-110 401.7 334 63.5
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 1.2e-109 400.6 341 62.5
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 8.6e-108 394.4 350 60.3
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 1.9e-107 393.3 347 59.4
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 7.3e-107 391.3 353 60.6
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 9.5e-107 391.0 359 59.9
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 6.2e-106 388.3 345 61.2
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 8.1e-106 387.9 351 61.3
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 5.2e-105 385.2 346 58.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 6.8e-105 384.8 339 60.2
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 1.5e-104 383.6 324 63.6
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 7.5e-104 381.3 350 60.6
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.3e-103 380.6 344 61.0
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 2.9e-103 379.4 355 58.3
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 4.9e-103 378.6 348 59.2
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 7.1e-102 374.8 343 60.9
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.2e-101 374.0 341 59.5
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 2.7e-101 372.9 318 61.0
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 4.6e-101 372.1 343 58.0
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 6.0e-101 371.7 346 58.1
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 2.3e-100 369.8 295 64.4
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 2.3e-100 369.8 348 58.3
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 5.1e-100 368.6 318 59.1
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.1e-99 367.5 296 63.2
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.9e-99 366.7 340 59.1
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 3.3e-99 365.9 337 59.1
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 3.3e-99 365.9 350 57.1
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 5.6e-99 365.2 325 58.8
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 5.6e-99 365.2 292 63.0
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 7.3e-99 364.8 347 57.9
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 9.5e-99 364.4 339 58.1
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.6e-98 363.6 336 57.1
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 1.6e-98 363.6 341 59.2
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 2.8e-98 362.8 341 58.4
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 4.7e-98 362.1 322 59.0
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 6.2e-98 361.7 340 58.2
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 6.2e-98 361.7 308 61.0
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.8e-97 360.1 339 58.1
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 2.3e-97 359.8 339 56.0
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 8.9e-97 357.8 325 57.8
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 9.9e-96 354.4 342 57.0
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 9.9e-96 354.4 335 56.4
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 1.1e-94 350.9 347 54.5
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.9e-94 350.1 341 56.6
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.2e-93 347.4 346 56.4
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 6.0e-93 345.1 383 50.9
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.3e-92 344.0 339 56.3
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 1.7e-92 343.6 347 53.6
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.7e-92 343.6 349 55.3
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 2.3e-92 343.2 344 55.2
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 3.9e-92 342.4 339 56.3
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.9e-92 342.4 339 56.3
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 3.9e-92 342.4 345 53.0
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 1.1e-91 340.9 348 54.6
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.5e-91 339.7 354 52.5
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.5e-91 339.7 338 55.6
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 7.3e-91 338.2 298 59.4
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 2.0e-88 330.1 344 52.9
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 5.8e-88 328.6 351 53.0
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 1.4e-86 323.9 312 56.7
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.9e-86 323.6 336 51.2
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 2.4e-86 323.2 340 52.4
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 3.2e-86 322.8 337 51.9
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 3.2e-86 322.8 308 54.9
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 2.7e-85 319.7 347 51.3
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 7.8e-85 318.2 317 54.6
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.3e-84 317.4 337 49.9
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 2.3e-84 316.6 379 48.5
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 3.3e-83 312.8 295 55.9
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 5.6e-83 312.0 315 54.6
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 2.1e-82 310.1 345 51.0
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 1.8e-81 307.0 286 54.9
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 4.0e-73 279.3 339 49.3
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.2e-63 246.9 343 48.1
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 1.8e-60 237.3 297 44.1
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 3.0e-60 236.5 246 48.8
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 2.5e-59 233.4 225 52.4
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 5.5e-54 215.7 208 55.3
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 2.1e-53 213.8 285 46.0
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 2.1e-53 213.8 297 41.4
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 6.1e-37 159.1 137 62.8
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 1.8e-33 147.5 96 69.8
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.2e-32 144.8 247 40.9
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 5.0e-31 139.4 293 33.1
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.2e-29 134.8 144 55.6
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 2.4e-25 120.6 290 30.0
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 5.9e-24 115.9 119 49.6
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 2.2e-23 114.0 101 54.5
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-22 110.2 307 27.0
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.3e-20 104.0 131 51.9
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 3.0e-12 77.0 149 34.2
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.7e-10 70.1 58 60.3
SMO164G0023 Selaginella moellendorffii HOM05D007241 ORTHO05D009142 4.5e-08 63.2 331 23.3


User provided reference genes

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