Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 0.0e+00 1163.3 640 100.0
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 0.0e+00 1090.9 624 97.1
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.6e-208 729.9 650 67.4
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.9e-203 711.1 373 94.6
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.2e-166 590.9 554 55.8
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 5.9e-166 588.6 576 58.7
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.8e-162 577.0 525 61.9
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.9e-156 557.0 538 54.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 7.2e-156 555.1 548 55.8
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.8e-154 550.4 454 68.5
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 3.4e-153 546.2 544 57.9
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.3e-152 542.0 554 54.5
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 9.1e-151 538.1 595 52.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.2e-148 529.6 579 49.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 7.2e-148 528.5 527 51.4
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 6.1e-147 525.4 583 51.6
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.2e-145 521.2 563 53.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 6.3e-144 515.4 575 54.3
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 3.1e-143 513.1 566 52.5
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.6e-142 510.8 527 50.1
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.7e-141 507.3 510 49.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.5e-140 504.2 588 48.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.9e-140 503.8 544 52.0
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.6e-139 500.7 543 51.7
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.6e-139 500.7 529 52.0
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 4.7e-139 499.2 541 49.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.4e-138 497.7 537 52.1
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 4.0e-138 496.1 586 49.5
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 8.9e-138 495.0 545 53.2
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.2e-137 494.6 536 48.1
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-135 487.6 568 48.6
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 5.4e-135 485.7 551 50.1
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.5e-134 483.0 531 49.9
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.9e-134 482.3 528 48.9
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.0e-133 479.2 544 47.6
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.6e-133 478.4 558 46.8
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-132 478.0 558 46.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.9e-132 477.2 586 45.9
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.2e-131 474.6 552 50.7
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.1e-131 473.8 555 46.7
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 2.0e-129 467.2 565 46.5
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.4e-129 466.1 556 48.9
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.3e-128 464.5 545 45.7
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.7e-128 463.0 545 47.2
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 3.7e-128 463.0 519 49.3
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 2.3e-125 453.8 548 47.3
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.3e-125 453.8 542 45.4
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.9e-125 453.0 470 54.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 6.6e-125 452.2 544 50.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.1e-124 451.4 545 48.6
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 3.6e-123 446.4 526 49.4
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 8.1e-123 445.3 571 48.9
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.1e-122 444.9 524 45.4
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 4.0e-122 443.0 554 47.5
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.6e-121 440.3 540 48.7
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 2.6e-121 440.3 547 48.6
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 6.4e-120 435.6 571 42.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 8.3e-120 435.3 571 46.4
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.4e-119 434.5 586 44.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 3.2e-119 433.3 553 47.6
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 4.1e-119 433.0 562 47.5
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 7.1e-119 432.2 584 45.5
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 6.0e-118 429.1 584 44.7
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.9e-117 426.4 546 47.3
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.6e-116 422.5 563 46.9
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.2e-115 421.4 555 47.7
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.6e-115 421.0 562 46.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 3.6e-115 419.9 593 43.5
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-114 417.9 527 44.4
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.3e-114 417.2 539 45.6
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 2.0e-113 414.1 543 45.1
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.6e-113 413.7 535 45.8
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 7.6e-113 412.1 551 43.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.7e-112 411.0 366 57.7
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.9e-111 407.5 542 45.6
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 4.1e-111 406.4 565 41.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 4.6e-110 402.9 547 45.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.9e-109 399.8 564 43.3
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.1e-106 391.7 578 45.7
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.3e-104 384.8 499 45.1
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 4.2e-103 379.8 562 38.1
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.3e-101 374.0 553 43.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.4e-98 364.8 412 54.6
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 6.9e-98 362.5 403 56.3
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.6e-97 359.0 529 40.1
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 9.9e-97 358.6 347 51.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 3.8e-96 356.7 488 41.6
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.2e-95 353.2 544 43.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.0e-93 347.1 262 91.6
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 9.6e-92 342.0 353 56.4
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 3.8e-88 330.1 456 46.7
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 3.2e-87 327.0 338 49.4
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.1e-82 310.5 500 37.6
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.0e-81 307.8 534 36.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.7e-80 304.7 501 36.9
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 4.3e-76 290.0 499 36.5
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 5.5e-71 273.1 396 40.9
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.1e-68 265.4 247 55.1
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.4e-66 258.5 624 29.5
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.3e-66 256.5 237 57.0
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-62 245.4 309 45.3
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.9e-61 240.4 311 43.1
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.8e-59 233.4 256 48.0
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.1e-58 230.7 354 37.9
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.1e-55 222.2 658 28.1
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 8.0e-46 189.5 315 44.4
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 8.5e-40 169.5 108 70.4
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.6e-36 157.9 122 58.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 6.3e-35 153.3 138 55.8
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 6.3e-35 153.3 157 52.2
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 8.3e-35 152.9 94 67.0
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.8e-34 151.8 122 59.8
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.2e-32 144.8 116 58.6
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.5e-32 142.9 321 32.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 4.2e-31 140.6 110 59.1
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 7.2e-31 139.8 113 57.5
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.1e-30 136.7 109 57.8
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.3e-29 134.8 121 53.7
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.2e-28 132.5 116 52.6
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 7.5e-28 129.8 114 47.4
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 8.3e-27 126.3 151 47.7
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.0e-24 119.4 128 47.7
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 6.6e-24 116.7 102 52.0
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.8e-22 111.3 100 49.0
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 4.7e-22 110.5 80 60.0
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.0e-21 109.4 92 53.3
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.0e-21 107.8 413 25.9
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.2e-21 107.1 80 53.8
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 5.4e-18 97.1 96 52.1
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 5.4e-18 97.1 95 50.5
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 7.8e-17 93.2 86 51.2
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-16 92.0 91 46.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.9e-16 90.9 75 46.7
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 5.0e-16 90.5 103 43.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.6e-14 85.5 75 52.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-12 79.3 101 39.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 9.8e-12 76.3 75 42.7
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.3e-11 73.2 62 48.4
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 8.3e-11 73.2 40 80.0
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.1e-10 72.8 82 40.2
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.4e-10 72.4 198 27.3
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.0e-10 70.1 109 37.6
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-09 69.3 78 37.2
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.7e-09 68.2 101 36.6
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.7e-09 68.2 101 36.6
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.3e-08 65.1 38 60.5
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 5.0e-08 63.9 43 67.4
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.6e-08 63.5 57 50.9
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.3e-07 60.8 69 46.4


User provided reference genes

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