Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 2.8e-169 598.6 314 100.0
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 4.9e-166 587.8 314 98.1
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.3e-162 575.1 314 95.5
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.2e-135 486.9 310 83.9
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 8.0e-108 394.4 408 58.6
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.9e-103 378.3 325 67.4
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 4.0e-99 365.5 259 76.1
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 8.3e-97 357.8 312 61.5
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 6.2e-92 341.7 309 59.5
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.3e-91 339.7 316 58.5
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 3.1e-91 339.3 309 58.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 2.6e-90 336.3 309 59.2
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.9e-88 330.1 313 58.1
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.5e-87 325.9 295 58.0
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 7.8e-87 324.7 295 58.0
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 5.0e-86 322.0 308 58.4
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 8.6e-86 321.2 313 56.2
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.1e-85 320.9 309 56.3
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 1.9e-85 320.1 314 56.1
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 3.3e-85 319.3 300 58.7
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.6e-84 317.0 313 52.1
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 2.1e-84 316.6 314 55.1
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 2.8e-84 316.2 312 56.4
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-83 314.3 230 67.0
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 1.4e-83 313.9 304 55.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 8.9e-83 311.2 314 58.0
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.7e-81 307.0 313 56.2
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.4e-81 305.1 325 60.0
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.1e-80 304.3 317 54.9
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.2e-80 302.8 313 55.6
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 4.1e-80 302.4 312 51.6
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.1e-80 302.4 314 54.1
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 9.2e-80 301.2 313 55.3
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.6e-79 300.4 307 54.7
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 4.6e-79 298.9 307 54.1
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 1.5e-77 293.9 311 53.4
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 2.8e-76 289.7 321 52.3
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.1e-75 287.7 325 51.1
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.4e-75 287.3 307 52.4
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 3.1e-75 286.2 320 50.0
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.1e-75 286.2 401 45.1
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.2e-74 284.3 306 52.0
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.2e-74 284.3 312 50.6
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 2.0e-74 283.5 319 51.1
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.4e-74 282.7 297 60.6
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 3.7e-73 279.3 312 50.0
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.1e-72 277.7 314 50.6
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.1e-72 277.7 310 51.3
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.9e-72 276.9 308 51.0
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 4.1e-72 275.8 306 52.0
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.2e-71 274.2 315 50.2
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 6.0e-71 271.9 308 52.3
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 4.3e-69 265.8 311 48.9
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.6e-68 263.8 309 50.2
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.8e-68 263.1 288 52.4
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.1e-67 261.2 290 53.4
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.4e-67 260.8 311 46.9
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 2.4e-67 260.0 310 49.4
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 5.2e-67 258.8 307 51.1
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 6.8e-67 258.5 318 49.1
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.7e-65 253.8 283 52.7
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.2e-65 253.4 311 48.2
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 3.8e-65 252.7 312 47.1
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 6.4e-65 251.9 313 47.3
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 8.4e-65 251.5 314 46.8
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 8.4e-65 251.5 269 53.2
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.9e-64 250.4 314 46.2
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.9e-64 250.4 282 50.7
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.2e-64 249.2 293 49.8
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 4.2e-64 249.2 276 50.7
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 4.2e-64 249.2 281 56.2
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.0e-62 244.6 313 46.0
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 3.0e-62 243.0 307 47.2
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 1.5e-61 240.7 233 52.8
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 3.3e-61 239.6 311 47.3
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.3e-60 237.7 311 45.3
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 2.1e-60 236.9 315 47.0
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.0e-58 230.3 313 44.7
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 3.4e-58 229.6 220 55.0
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 4.4e-58 229.2 285 46.7
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.3e-57 227.6 306 43.8
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.8e-57 226.1 307 41.0
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.1e-56 224.6 301 44.2
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 5.4e-56 222.2 317 46.7
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 5.4e-56 222.2 248 53.2
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 7.1e-56 221.9 216 54.2
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 1.2e-55 221.1 272 47.4
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.2e-55 221.1 216 54.2
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.6e-55 220.7 311 42.4
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.1e-55 220.3 307 40.4
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 3.5e-55 219.5 272 46.7
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 6.0e-55 218.8 313 43.5
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 7.9e-55 218.4 275 48.0
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 3.3e-53 213.0 316 43.0
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 7.4e-53 211.8 316 42.4
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 7.4e-53 211.8 319 42.3
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.3e-52 211.1 306 42.8
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 2.1e-52 210.3 314 41.7
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 4.8e-52 209.1 283 48.8
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 4.8e-52 209.1 289 45.0
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 1.4e-51 207.6 280 45.0
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 1.7e-49 200.7 274 44.5
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 5.5e-48 195.7 254 48.8
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.1e-43 181.4 222 43.2
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.8e-43 180.6 131 64.1
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 9.0e-43 178.3 300 39.0
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.5e-40 170.2 139 59.0
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 9.3e-40 168.3 307 38.8
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 1.6e-39 167.5 189 52.4
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 4.3e-37 159.5 246 42.3
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 8.5e-33 145.2 250 40.0
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 9.3e-32 141.7 192 42.2
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.0e-30 138.3 105 61.0
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 2.2e-28 130.6 310 32.3
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.4e-27 127.9 204 43.6
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.5e-26 124.4 100 62.0
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 7.7e-26 122.1 137 46.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 2.5e-24 117.1 262 30.2
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.0e-22 111.7 310 32.6
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.2e-20 104.0 64 79.7
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.2e-20 104.0 64 79.7
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.8e-19 100.9 292 30.1
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.0e-17 95.1 92 56.5
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.1e-16 91.7 315 30.5
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 6.3e-12 75.9 64 56.2
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 3.5e-10 70.1 154 29.9
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 7.2e-08 62.4 140 31.4
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 7.2e-08 62.4 118 40.7


User provided reference genes

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