Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 7.4e-294 1013.1 489 100.0
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 9.4e-289 996.1 489 98.4
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 2.5e-286 988.0 489 96.5
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 7.2e-273 943.3 489 91.8
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.4e-268 928.3 489 90.6
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 9.4e-265 916.4 550 81.6
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 7.5e-238 827.0 483 79.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 9.8e-238 826.6 495 78.4
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 2.9e-237 825.1 512 77.0
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 5.4e-236 820.8 489 78.9
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 3.9e-234 814.7 483 77.6
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 1.1e-233 813.1 484 78.1
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.5e-233 812.0 483 79.3
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 1.6e-232 809.3 490 78.4
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 1.6e-232 809.3 478 78.7
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 1.4e-231 806.2 491 77.0
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.1e-231 805.1 489 76.5
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 4.0e-231 804.7 489 77.3
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 1.5e-230 802.7 482 78.0
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 2.2e-229 798.9 490 76.7
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 2.9e-229 798.5 491 75.2
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 3.7e-229 798.1 493 76.9
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 4.9e-229 797.7 488 77.7
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 6.4e-229 797.3 490 77.6
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 8.3e-229 797.0 483 77.8
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.1e-228 796.6 483 78.3
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 1.4e-228 796.2 483 78.3
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 3.2e-228 795.0 480 76.9
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 1.6e-227 792.7 484 76.7
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 2.7e-227 792.0 481 77.3
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 6.0e-227 790.8 485 77.5
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 3.9e-226 788.1 489 76.5
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 5.1e-226 787.7 507 75.0
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 6.6e-226 787.3 499 75.8
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 1.9e-225 785.8 490 74.5
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.6e-224 782.7 489 75.7
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 6.2e-224 780.8 477 77.6
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 8.1e-224 780.4 490 76.1
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 1.4e-223 779.6 487 76.4
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 8.9e-223 776.9 484 75.2
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 8.9e-223 776.9 525 72.2
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.5e-222 776.2 489 73.6
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 2.0e-222 775.8 510 73.5
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 2.6e-222 775.4 489 73.6
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 3.4e-222 775.0 491 73.7
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 3.4e-222 775.0 479 77.0
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 7.6e-222 773.9 486 75.1
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.3e-221 773.1 481 75.3
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 1.7e-221 772.7 479 76.6
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.9e-221 771.9 495 74.3
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 2.9e-221 771.9 477 75.9
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 1.9e-220 769.2 486 73.7
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 2.4e-220 768.8 477 75.5
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.2e-219 766.5 492 73.6
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 4.6e-219 764.6 482 76.1
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 4.6e-219 764.6 486 75.5
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 7.8e-219 763.8 480 75.6
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 7.8e-219 763.8 514 71.0
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 2.3e-218 762.3 459 78.0
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 5.1e-218 761.1 480 75.4
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.6e-216 756.1 486 73.3
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.1e-215 753.4 529 70.1
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.8e-215 752.7 517 69.1
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 2.4e-215 752.3 482 73.4
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 2.0e-214 749.2 498 72.7
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 2.2e-213 745.7 483 73.3
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 2.9e-213 745.3 518 69.1
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.9e-213 744.6 486 71.8
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 8.4e-213 743.8 485 73.2
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 1.9e-212 742.7 487 76.6
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 9.3e-212 740.3 467 73.2
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.6e-211 739.6 427 81.3
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.0e-210 736.9 469 71.9
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 4.3e-209 731.5 489 72.8
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 7.3e-209 730.7 506 70.2
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 5.3e-207 724.5 490 70.8
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 2.0e-206 722.6 495 71.7
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.2e-205 719.2 458 74.7
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.1e-204 716.8 455 73.0
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 3.2e-204 715.3 549 63.9
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 3.0e-202 708.8 517 68.1
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 7.3e-201 704.1 491 68.4
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 7.6e-198 694.1 505 67.9
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 3.8e-197 691.8 477 66.5
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 5.4e-196 688.0 482 68.5
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 8.7e-194 680.6 506 66.8
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.1e-185 653.7 510 63.7
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.9e-185 652.9 467 64.2
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 1.5e-182 643.3 473 63.4
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 2.2e-181 639.4 470 63.2
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 8.4e-181 637.5 482 65.8
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 6.1e-179 631.3 381 79.5
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 6.7e-178 627.9 387 77.8
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.9e-177 626.3 467 63.4
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 9.4e-172 607.4 381 74.8
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 3.3e-169 599.0 377 76.1
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 2.5e-164 582.8 385 73.8
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 1.6e-158 563.5 384 70.6
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 3.8e-157 558.9 472 57.8
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 2.4e-151 539.7 468 57.1
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 4.5e-150 535.4 358 69.8
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 5.0e-149 531.9 392 65.1
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 1.7e-144 516.9 332 74.7
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 1.1e-140 504.2 351 70.7
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 4.4e-137 492.3 479 54.1
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.3e-130 469.9 367 64.9
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 1.0e-125 454.5 454 50.4
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 9.5e-124 448.0 389 57.1
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 2.8e-123 446.4 437 49.9
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.6e-123 446.0 253 80.6
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.7e-118 429.9 281 71.2
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.7e-117 427.2 288 67.7
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 3.2e-111 406.4 343 57.4
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 1.7e-88 330.9 187 78.1
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 9.6e-76 288.5 164 82.9
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 1.8e-66 257.7 503 35.2
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.3e-51 208.4 107 86.0
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 6.7e-45 186.0 94 85.1
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.6e-33 148.3 103 71.8
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 2.0e-33 147.9 70 90.0
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.7e-32 144.8 81 81.5
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 9.4e-31 139.0 93 66.7
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 7.5e-28 129.4 211 34.1
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 3.7e-27 127.1 128 52.3
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.5e-25 120.6 99 58.6
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 5.0e-24 116.7 199 36.7
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 1.5e-23 115.2 70 75.7
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 4.3e-15 87.0 52 82.7
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 3.5e-09 67.4 48 66.7
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 8.0e-06 56.2 50 48.0


User provided reference genes

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