Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 5.2e-226 787.3 382 100.0
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 7.7e-222 773.5 382 98.4
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 7.5e-201 703.7 379 91.6
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.3e-189 666.4 382 86.4
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.2e-185 653.3 382 84.8
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.5e-172 609.8 335 88.4
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 3.9e-149 531.9 373 70.0
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 5.6e-148 528.1 376 68.6
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 5.8e-145 518.1 386 66.6
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.3e-144 516.9 390 67.2
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 6.5e-144 514.6 386 65.8
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 6.5e-144 514.6 384 67.4
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.4e-143 513.5 389 65.6
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 3.2e-143 512.3 388 66.2
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 4.2e-143 511.9 385 67.3
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.6e-142 510.0 384 66.4
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 6.0e-142 508.1 381 66.4
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 1.3e-141 506.9 382 66.5
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 5.1e-141 505.0 393 65.4
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 8.7e-141 504.2 385 66.5
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 1.1e-140 503.8 384 66.9
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.9e-140 503.1 384 66.9
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 4.3e-140 501.9 386 66.1
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 5.7e-140 501.5 374 66.6
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 7.4e-140 501.1 391 65.0
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 9.6e-140 500.7 382 66.2
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 1.3e-139 500.4 381 65.6
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 3.7e-139 498.8 383 65.8
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 1.8e-138 496.5 384 65.1
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.8e-138 496.5 382 64.7
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 1.8e-138 496.5 385 64.7
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.2e-137 493.8 390 64.6
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.5e-137 493.4 376 66.0
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 2.0e-137 493.0 382 64.9
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 2.0e-137 493.0 375 66.7
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 2.6e-137 492.7 385 65.5
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 3.4e-137 492.3 390 64.1
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 4.5e-137 491.9 381 65.4
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 7.6e-137 491.1 378 66.1
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.3e-136 490.3 375 66.1
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 1.7e-136 490.0 384 64.8
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 2.2e-136 489.6 379 65.7
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 3.8e-136 488.8 377 65.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 5.0e-136 488.4 377 65.8
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 5.0e-136 488.4 378 65.3
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.1e-135 487.3 368 67.7
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 1.9e-135 486.5 380 64.2
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.9e-135 486.5 386 63.5
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 3.2e-135 485.7 380 65.0
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 7.1e-135 484.6 382 64.9
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.2e-134 483.8 366 65.3
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.8e-133 479.9 368 65.5
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 2.3e-133 479.6 378 65.1
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 3.0e-133 479.2 383 61.6
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 6.7e-133 478.0 379 64.6
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.9e-132 476.5 385 64.2
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 1.9e-132 476.5 382 65.2
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 7.4e-132 474.6 375 63.7
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.6e-131 473.4 385 63.6
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 2.8e-131 472.6 369 63.7
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 6.3e-131 471.5 384 59.9
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 9.0e-130 467.6 375 62.9
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 2.9e-128 462.6 383 61.9
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 6.5e-128 461.5 391 61.4
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 6.5e-128 461.5 389 60.4
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 1.9e-127 459.9 417 58.5
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 2.5e-127 459.5 370 61.9
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.6e-126 455.7 386 60.6
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 7.9e-126 454.5 368 63.0
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 2.0e-124 449.9 369 62.1
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 8.2e-123 444.5 361 63.2
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 1.4e-122 443.7 351 64.4
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 7.2e-119 431.4 394 59.1
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 4.4e-116 422.2 347 62.2
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 5.9e-113 411.8 317 65.3
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 7.2e-111 404.8 306 66.3
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.0e-109 401.0 300 66.3
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.8e-109 400.2 328 62.5
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 9.7e-108 394.4 454 49.3
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.4e-106 389.8 363 57.3
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 6.5e-104 381.7 373 52.8
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.2e-102 377.5 461 46.4
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 3.8e-96 355.9 335 56.4
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.0e-92 343.6 394 49.5
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 1.1e-87 327.8 293 59.4
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.9e-87 327.0 316 55.1
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 4.2e-87 325.9 280 58.9
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.2e-84 317.8 376 50.0
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 1.7e-83 313.9 539 38.8
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 2.6e-76 290.0 277 56.3
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 9.2e-74 281.6 266 56.8
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.6e-73 279.3 374 45.5
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 4.3e-71 272.7 167 75.4
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 3.6e-70 269.6 193 68.9
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 2.3e-69 266.9 384 42.2
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 3.1e-69 266.5 291 51.2
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 5.2e-69 265.8 420 37.6
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.2e-67 260.4 263 55.1
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 3.2e-66 256.5 306 51.0
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 9.2e-66 255.0 261 54.8
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 2.1e-65 253.8 281 51.6
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 8.1e-62 241.9 152 75.7
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 7.3e-55 218.8 258 50.4
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 7.6e-52 208.8 223 52.0
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.2e-51 207.2 124 83.9
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.0e-45 186.4 277 43.0
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.5e-44 184.5 399 33.6
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 3.8e-43 179.9 406 35.2
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 4.9e-43 179.5 196 50.5
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 7.9e-41 172.2 111 73.9
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 1.1e-31 141.7 82 79.3
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 2.5e-31 140.6 194 40.7
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 9.0e-29 132.1 141 48.2
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.2e-28 131.7 84 73.8
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.3e-24 118.2 80 68.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.1e-24 116.3 80 66.2
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-23 114.0 82 67.1
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 5.9e-20 102.8 57 82.5
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.9e-18 97.8 54 74.1
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.2e-18 96.7 56 78.6
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.3e-15 86.7 49 77.6
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.3e-14 85.1 56 66.1
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.7e-14 83.6 50 72.0
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.7e-14 83.6 50 72.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 8.5e-11 72.4 89 41.6
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 4.6e-09 66.6 120 36.7
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 4.6e-09 66.6 61 55.7
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-07 61.6 45 57.8
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.2e-06 57.8 28 89.3


User provided reference genes

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