Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 3.6e-129 464.9 234 100.0
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 5.2e-128 461.1 234 99.1
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 8.6e-123 443.7 234 95.7
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.2e-111 406.8 234 87.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-104 382.9 232 84.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.4e-103 378.3 234 82.9
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 4.9e-102 374.8 236 81.8
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.3e-75 287.0 221 68.3
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.3e-75 287.0 221 68.3
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 7.4e-74 281.2 222 68.0
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 6.2e-73 278.1 164 79.9
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 2.4e-72 276.2 195 69.2
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 4.9e-70 268.5 184 73.4
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.4e-69 266.9 163 77.3
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 2.4e-69 266.2 215 62.3
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 2.4e-69 266.2 158 77.8
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.4e-69 266.2 158 77.8
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.4e-69 266.2 158 77.8
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 2.4e-69 266.2 201 66.2
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 3.2e-69 265.8 159 79.9
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.2e-69 265.8 158 77.8
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 5.5e-69 265.0 188 70.2
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 9.3e-69 264.2 200 66.0
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.6e-68 263.5 172 74.4
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 2.7e-68 262.7 158 79.1
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 3.5e-68 262.3 196 67.9
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 3.5e-68 262.3 195 67.7
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 4.6e-68 261.9 227 60.8
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 7.9e-68 261.2 158 76.6
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 7.9e-68 261.2 170 72.9
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.0e-67 260.8 158 76.6
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.3e-67 260.4 158 76.6
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 2.3e-67 259.6 194 66.5
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 3.9e-67 258.8 160 76.9
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 6.7e-67 258.1 154 78.6
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 6.7e-67 258.1 158 77.8
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 8.7e-67 257.7 174 71.8
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.1e-66 257.3 158 77.2
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 1.1e-66 257.3 216 62.0
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 1.5e-66 256.9 153 79.7
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.9e-66 256.5 193 66.8
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.9e-66 256.5 154 78.6
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.5e-66 256.1 197 64.0
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 3.3e-66 255.8 197 65.0
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 3.3e-66 255.8 213 61.5
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 3.3e-66 255.8 169 74.6
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 3.3e-66 255.8 170 73.5
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 4.3e-66 255.4 157 76.4
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 5.6e-66 255.0 197 64.5
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 5.6e-66 255.0 170 72.4
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 9.6e-66 254.2 158 75.9
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 1.3e-65 253.8 212 61.8
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.6e-65 253.4 156 76.3
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 1.6e-65 253.4 154 77.3
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 1.6e-65 253.4 154 77.3
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 1.6e-65 253.4 154 77.3
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.6e-65 253.4 159 72.3
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 1.6e-65 253.4 154 76.6
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 2.1e-65 253.1 240 57.9
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.8e-65 252.7 155 76.1
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 3.7e-65 252.3 154 76.6
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 3.7e-65 252.3 154 76.6
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 8.1e-65 251.1 211 61.6
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.1e-64 250.8 213 61.5
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.1e-64 250.8 150 77.3
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.4e-64 250.4 231 58.0
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.4e-64 249.6 212 60.8
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.4e-64 249.6 208 63.0
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 2.4e-64 249.6 208 63.0
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.4e-64 249.6 224 58.9
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.4e-64 249.6 222 60.4
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 3.1e-64 249.2 168 73.2
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 3.1e-64 249.2 155 75.5
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 4.0e-64 248.8 158 72.2
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 5.3e-64 248.4 210 61.4
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 5.3e-64 248.4 211 61.1
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 6.9e-64 248.1 168 73.8
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 9.0e-64 247.7 219 61.2
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.0e-63 246.5 154 76.0
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.0e-63 246.5 158 72.2
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 2.6e-63 246.1 185 65.4
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 2.6e-63 246.1 150 76.0
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 5.8e-63 245.0 154 73.4
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 5.8e-63 245.0 208 61.5
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 5.8e-63 245.0 155 72.9
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 7.6e-63 244.6 154 72.7
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.0e-62 244.2 154 72.7
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 6.5e-62 241.5 187 63.6
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 8.4e-62 241.1 149 76.5
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 5.5e-61 238.4 154 73.4
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 7.1e-61 238.0 158 70.3
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 7.1e-61 238.0 158 70.3
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 1.6e-60 236.9 255 51.4
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.6e-60 236.9 157 68.8
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.3e-59 233.0 145 73.1
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-58 230.7 179 62.6
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 1.9e-58 229.9 192 60.9
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 4.3e-58 228.8 196 61.2
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 9.6e-58 227.6 154 71.4
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 4.8e-57 225.3 210 57.6
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 4.5e-55 218.8 203 54.7
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 7.6e-55 218.0 194 63.9
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.1e-53 214.2 154 67.5
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.9e-53 213.4 167 64.1
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 5.7e-50 201.8 151 61.6
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 5.7e-50 201.8 154 62.3
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 8.2e-49 198.0 198 56.6
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 4.1e-48 195.7 123 75.6
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.5e-47 193.7 154 56.5
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.9e-45 186.8 208 49.5
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 9.4e-45 184.5 143 60.1
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 7.4e-42 174.9 148 58.8
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 2.9e-38 162.9 163 50.9
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 6.1e-36 155.2 85 81.2
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.2e-30 136.7 136 53.7
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.2e-30 136.7 136 53.7
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.0e-27 125.9 160 51.2
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 9.7e-26 121.3 85 71.8
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 1.3e-25 120.9 131 48.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.3e-25 120.9 107 48.6
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 4.5e-23 112.5 74 74.3
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 5.0e-22 109.0 130 43.1
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 9.4e-21 104.8 115 38.3
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 7.2e-13 78.6 82 50.0
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.0e-11 73.2 64 64.1
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 8.8e-11 71.6 36 83.3
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 8.3e-09 65.1 43 67.4
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 5.4e-08 62.4 71 46.5
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 4.5e-07 59.3 42 64.3
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 1.7e-06 57.4 127 28.3
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 1.7e-06 57.4 127 28.3
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 3.8e-06 56.2 104 36.5
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.6e-06 55.5 115 29.6
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 6.6e-06 55.5 94 36.2


User provided reference genes

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