Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 2.0e-86 322.4 164 100.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.8e-85 318.2 164 98.8
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.7e-81 304.3 164 95.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.3e-53 213.4 169 65.1
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.9e-53 212.2 175 66.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 5.0e-53 211.5 165 66.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.9e-52 209.5 175 64.0
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.9e-52 209.5 162 66.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.9e-52 209.5 176 63.1
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 5.5e-52 208.0 178 60.7
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 7.2e-52 207.6 175 61.7
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 7.2e-52 207.6 172 64.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.2e-51 206.8 175 61.7
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.2e-51 206.8 175 64.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.8e-51 205.7 175 62.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 3.6e-51 205.3 173 60.7
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-51 204.9 161 64.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 4.7e-51 204.9 174 62.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.1e-51 204.5 173 60.7
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 8.0e-51 204.1 174 62.1
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 8.0e-51 204.1 173 60.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.0e-50 203.8 170 64.7
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-50 203.8 142 70.4
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-50 203.8 142 70.4
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.0e-50 203.8 176 61.4
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.0e-50 203.8 173 61.3
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.4e-50 203.4 176 60.2
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.4e-50 203.4 176 60.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.8e-50 203.0 175 60.6
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.8e-50 203.0 162 66.0
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.8e-50 203.0 174 61.5
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.3e-50 202.6 178 60.1
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 3.0e-50 202.2 175 61.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-50 202.2 175 61.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-50 202.2 175 61.7
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 3.0e-50 202.2 170 61.8
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 6.8e-50 201.1 164 64.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 6.8e-50 201.1 164 64.0
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 6.8e-50 201.1 164 64.0
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 6.8e-50 201.1 164 64.0
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 6.8e-50 201.1 163 63.8
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 6.8e-50 201.1 179 60.3
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 6.8e-50 201.1 147 68.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.8e-50 201.1 175 60.6
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 6.8e-50 201.1 135 73.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 8.9e-50 200.7 163 63.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 8.9e-50 200.7 174 60.3
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-49 200.3 164 63.4
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-49 200.3 164 63.4
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.2e-49 200.3 174 60.9
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-49 199.9 171 63.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.5e-49 199.9 165 64.2
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-49 199.5 142 69.0
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.0e-49 199.5 174 59.8
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.6e-49 199.1 175 60.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.6e-49 199.1 174 59.8
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 3.4e-49 198.7 176 61.9
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.4e-49 198.7 171 62.6
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-49 198.4 145 66.9
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.4e-49 198.4 175 60.0
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.4e-49 198.4 175 60.0
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 4.4e-49 198.4 173 60.7
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.7e-49 198.0 176 62.5
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 7.5e-49 197.6 157 65.0
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 7.5e-49 197.6 135 73.3
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 9.8e-49 197.2 175 58.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.3e-48 196.8 176 59.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.3e-48 196.8 171 62.0
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.3e-48 196.8 160 65.6
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.7e-48 196.4 190 55.8
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.7e-48 196.4 174 62.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.2e-48 196.1 168 60.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.2e-48 196.1 175 60.0
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.2e-48 196.1 158 63.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.2e-48 196.1 165 61.2
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.8e-48 195.7 175 59.4
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.9e-48 194.9 166 61.4
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 4.9e-48 194.9 125 76.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 4.9e-48 194.9 163 62.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.3e-48 194.5 177 60.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.3e-48 194.5 176 59.1
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.3e-48 194.1 171 61.4
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 8.3e-48 194.1 159 64.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 8.3e-48 194.1 175 60.6
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 8.3e-48 194.1 158 63.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 8.3e-48 194.1 173 60.1
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.4e-47 193.4 175 58.3
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.8e-47 193.0 178 60.1
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.4e-47 192.6 163 62.0
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.4e-47 192.6 175 59.4
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.1e-47 192.2 170 60.6
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.1e-47 192.2 177 58.2
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 3.1e-47 192.2 173 62.4
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 5.4e-47 191.4 163 61.3
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 7.0e-47 191.0 122 75.4
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 9.2e-47 190.7 176 59.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.2e-46 190.3 127 73.2
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.2e-46 190.3 174 58.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.2e-46 190.3 174 59.8
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.6e-46 189.9 136 69.9
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.0e-46 189.5 175 57.7
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.0e-46 189.5 124 74.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.0e-46 189.5 176 55.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.7e-46 189.1 176 57.4
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.7e-46 189.1 161 64.0
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 3.5e-46 188.7 124 76.6
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 3.5e-46 188.7 124 76.6
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.5e-46 188.3 166 57.8
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 5.9e-46 188.0 157 62.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 7.8e-46 187.6 165 60.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 7.8e-46 187.6 123 74.0
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 7.8e-46 187.6 131 70.2
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-45 187.2 124 75.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.0e-45 187.2 156 62.8
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-45 186.8 137 67.9
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.3e-45 186.8 175 59.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 2.3e-45 186.0 126 71.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-45 186.0 124 75.0
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.3e-45 186.0 124 72.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 5.0e-45 184.9 126 73.0
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 6.6e-45 184.5 202 53.0
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 8.6e-45 184.1 173 59.0
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 8.6e-45 184.1 123 71.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.9e-44 183.0 170 60.6
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 3.3e-44 182.2 191 52.4
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 7.3e-44 181.0 127 69.3
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.8e-43 179.1 158 59.5
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.8e-43 179.1 187 53.5
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 4.7e-43 178.3 150 60.0
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 6.1e-43 177.9 142 64.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 8.0e-43 177.6 144 66.0
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.4e-42 176.8 161 58.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.8e-42 176.4 122 70.5
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.3e-42 176.0 164 59.8
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.3e-42 176.0 144 64.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.5e-41 173.3 126 65.9
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.6e-41 172.6 144 63.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.9e-40 169.1 142 63.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 3.7e-40 168.7 129 67.4
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 9.2e-39 164.1 142 63.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.5e-38 162.2 174 51.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.6e-38 161.8 174 52.9
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 2.3e-37 159.5 163 56.4
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 6.6e-37 157.9 123 62.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.1e-35 152.9 147 57.1
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 4.0e-34 148.7 123 60.2
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 6.8e-34 147.9 145 56.6
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 8.9e-34 147.5 122 57.4
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-33 147.1 142 57.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 4.4e-33 145.2 142 57.0
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 9.8e-33 144.1 142 56.3
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.3e-29 133.7 97 66.0
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.3e-29 132.9 130 56.2
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.0e-29 132.5 103 61.2
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.6e-27 126.7 95 64.2
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 8.9e-26 120.9 90 66.7
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 8.9e-26 120.9 85 69.4
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 8.9e-26 120.9 92 65.2
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.1e-23 114.0 129 51.9
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.6e-21 104.8 66 75.8
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.3e-20 102.1 66 75.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.6e-19 100.1 66 74.2
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.0e-18 95.5 105 53.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 7.6e-17 91.3 107 52.3
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 4.2e-15 85.5 66 63.6
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 5.4e-15 85.1 66 63.6
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.1e-14 83.2 128 39.1
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.5e-14 82.4 45 82.2
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.0e-14 81.6 58 65.5
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 6.0e-14 81.6 57 68.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.0e-13 80.9 61 62.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.3e-13 80.5 57 66.7
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.6e-12 75.1 67 52.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.9e-08 62.8 38 76.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.9e-07 60.1 37 73.0
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.2e-07 59.3 37 73.0
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 4.6e-06 55.5 37 67.6
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 6.0e-06 55.1 58 51.7


User provided reference genes

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