Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 8.3e-244 846.7 445 100.0
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.5e-242 841.3 445 99.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.5e-240 835.9 445 98.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.5e-216 756.1 450 90.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 6.4e-212 740.7 443 87.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 7.9e-186 654.1 448 78.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.2e-183 644.0 451 76.3
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 7.0e-182 641.0 461 74.8
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.0e-180 637.1 454 75.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.3e-180 636.7 453 76.8
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.7e-180 636.3 454 76.0
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.2e-180 636.0 457 74.6
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.1e-179 633.6 446 75.8
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.4e-179 633.3 453 75.9
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 4.2e-179 631.7 462 74.2
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.2e-179 631.7 456 75.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 5.5e-179 631.3 448 74.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 7.2e-179 630.9 457 74.2
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 7.2e-179 630.9 446 75.3
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 9.4e-179 630.6 421 78.1
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-178 630.2 447 75.2
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.6e-178 629.8 455 74.7
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 6.1e-178 627.9 456 74.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.1e-178 627.9 456 73.5
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.0e-177 627.1 453 74.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.0e-177 627.1 461 73.3
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 6.7e-177 624.4 455 73.6
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 8.8e-177 624.0 455 73.4
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 7.4e-176 620.9 454 75.1
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.8e-174 616.3 454 73.3
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.4e-174 615.9 448 73.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 7.0e-174 614.4 451 72.5
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.0e-174 614.4 460 73.3
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 9.1e-174 614.0 442 74.4
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.2e-173 613.6 450 72.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.2e-173 613.6 455 74.5
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.6e-173 613.2 452 74.6
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 2.6e-173 612.5 458 72.9
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.5e-173 612.1 458 72.9
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.0e-172 610.5 462 72.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 3.8e-172 608.6 455 74.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.5e-172 607.8 457 71.8
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.1e-171 607.1 457 74.2
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.9e-171 606.3 454 73.6
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 9.4e-171 604.0 452 72.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.2e-170 603.6 452 72.6
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.2e-170 603.6 455 73.2
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.1e-170 602.8 452 72.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.1e-170 602.8 417 75.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 4.7e-170 601.7 441 73.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.1e-170 601.3 417 75.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 8.0e-170 600.9 417 75.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.4e-169 600.1 457 71.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.8e-169 599.7 455 73.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 5.2e-169 598.2 445 72.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.5e-168 596.7 421 75.3
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.7e-168 594.7 449 70.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.8e-167 591.7 445 71.2
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 8.3e-167 590.9 456 70.8
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.4e-166 590.1 460 71.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 7.0e-166 587.8 454 70.5
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 7.0e-166 587.8 454 70.5
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 7.0e-166 587.8 453 70.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.2e-165 587.0 447 70.9
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 2.7e-165 585.9 449 70.2
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 2.7e-165 585.9 449 70.6
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 4.5e-165 585.1 451 69.6
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.9e-165 584.7 455 69.9
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-163 580.5 455 69.9
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.2e-163 578.9 458 69.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 4.2e-163 578.6 452 71.2
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 7.2e-163 577.8 362 80.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.2e-162 577.0 448 68.5
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.6e-162 576.6 451 68.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.7e-162 575.9 462 68.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.0e-161 573.9 452 68.4
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.0e-161 572.4 454 67.6
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.0e-161 572.4 452 68.6
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 6.8e-161 571.2 448 68.1
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.5e-160 570.1 452 68.1
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.6e-160 569.3 449 68.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.3e-159 567.0 450 68.4
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.8e-159 565.1 445 68.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-158 563.9 452 68.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-158 563.9 452 68.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-158 563.9 452 68.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.4e-158 563.5 445 67.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.4e-158 563.5 320 91.9
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.8e-158 563.1 445 67.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.1e-158 562.4 445 68.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 9.1e-158 560.8 445 67.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.2e-157 560.5 448 68.5
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.6e-156 554.3 459 66.2
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.6e-156 554.3 459 66.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-155 553.5 452 67.0
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.2e-155 552.0 341 80.6
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.4e-153 547.0 457 67.2
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 5.7e-152 541.6 400 73.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 3.7e-151 538.9 365 74.8
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.2e-149 533.9 362 76.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.4e-142 509.6 452 63.7
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.0e-140 502.7 282 93.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.2e-138 497.3 451 62.5
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.8e-136 488.4 451 61.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 8.3e-135 484.6 311 79.7
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 6.4e-127 458.4 290 80.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.2e-126 456.1 307 76.9
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.5e-120 437.2 423 57.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.2e-119 433.3 371 61.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 4.9e-119 432.2 376 61.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 4.2e-118 429.1 368 60.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 5.4e-118 428.7 373 60.6
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 3.9e-116 422.5 295 73.9
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 7.3e-115 418.3 280 74.6
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-114 416.8 368 58.7
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-106 391.0 377 57.3
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.7e-103 380.6 368 57.1
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.7e-101 373.2 323 61.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.3e-100 370.2 279 71.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-97 361.3 377 54.6
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.3e-95 354.4 342 57.9
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.1e-94 351.3 355 53.5
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 7.1e-94 348.6 378 52.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 3.8e-87 326.2 368 53.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.8e-84 317.4 383 48.0
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 5.0e-79 299.3 243 65.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 3.9e-68 263.1 332 49.1
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 8.0e-53 212.2 150 72.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 4.4e-51 206.5 345 40.6
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-41 174.5 222 47.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.0e-41 172.6 164 54.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.6e-39 166.0 115 73.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-33 147.5 88 78.4
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-31 141.4 115 64.3
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.3e-31 141.0 175 46.9
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-31 139.8 171 49.1
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 4.1e-25 120.2 73 87.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.2e-20 103.2 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.7e-16 90.9 102 50.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.5e-14 84.3 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-09 68.2 80 55.0
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 6.6e-07 59.7 141 34.0


User provided reference genes

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