Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 4.6e-170 602.1 578 100.0
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 9.1e-166 587.8 581 98.6
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 2.7e-162 576.2 574 96.9
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 1.1e-142 511.1 531 94.7
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 8.0e-130 468.4 555 87.4
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.0e-129 468.0 561 88.6
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 5.0e-116 422.5 337 80.4
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 7.3e-115 418.7 337 80.1
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 7.3e-115 418.7 337 80.1
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 3.4e-112 409.8 337 81.0
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 9.9e-112 408.3 336 79.5
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 4.9e-111 406.0 337 76.9
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 2.7e-109 400.2 304 85.5
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.0e-108 398.3 337 77.4
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 2.3e-108 397.1 322 81.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 6.6e-108 395.6 337 76.9
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 9.5e-107 391.7 337 75.1
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.1e-106 390.6 304 83.2
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 2.1e-106 390.6 331 76.7
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 1.1e-105 388.3 337 62.3
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.4e-105 387.1 320 79.4
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 4.0e-105 386.3 309 81.2
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 8.9e-105 385.2 337 75.7
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 1.2e-104 384.8 337 76.0
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 2.0e-104 384.0 322 78.3
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 2.6e-104 383.6 337 74.8
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 7.6e-104 382.1 338 74.9
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 9.9e-104 381.7 337 75.4
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.9e-103 380.2 337 77.4
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 8.4e-103 378.6 307 80.8
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.4e-102 377.9 322 77.6
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 3.2e-102 376.7 329 76.6
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 5.4e-102 375.9 337 74.8
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 2.1e-101 374.0 321 78.2
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 7.8e-101 372.1 345 72.8
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 1.0e-100 371.7 338 75.4
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 5.1e-100 369.4 307 72.0
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 8.7e-100 368.6 322 76.4
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.9e-99 367.5 334 73.4
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 9.6e-99 365.2 309 78.0
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 3.1e-97 360.1 321 75.1
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 4.0e-97 359.8 325 74.8
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 9.0e-97 358.6 324 76.2
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 3.4e-96 356.7 295 80.3
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 3.4e-96 356.7 303 77.6
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 4.4e-96 356.3 303 76.9
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.3e-95 354.8 295 78.6
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.7e-95 354.4 304 77.0
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 2.9e-95 353.6 337 71.5
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.9e-95 353.6 338 72.8
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 2.9e-95 353.6 303 76.9
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 3.8e-95 353.2 299 77.9
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 6.4e-95 352.4 338 72.8
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 8.4e-95 352.1 303 77.6
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 8.4e-95 352.1 337 72.4
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.1e-94 351.7 301 79.1
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 1.4e-94 351.3 296 71.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.2e-94 350.1 302 76.5
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 3.2e-94 350.1 325 72.0
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 7.1e-94 349.0 295 79.0
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 9.3e-94 348.6 337 70.9
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.2e-93 348.2 295 79.0
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.6e-93 347.8 338 72.2
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 2.1e-93 347.4 321 73.8
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.7e-93 347.1 335 71.6
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 2.7e-93 347.1 295 78.6
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.5e-93 346.7 321 75.1
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 6.0e-93 345.9 338 71.9
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 6.0e-93 345.9 304 75.3
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 7.8e-93 345.5 338 71.9
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.0e-92 345.1 346 71.7
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 5.1e-92 342.8 332 72.3
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 8.7e-92 342.0 303 77.2
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 1.5e-91 341.3 337 69.1
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.5e-91 341.3 331 71.0
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.9e-91 340.9 311 74.3
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.3e-91 340.1 328 58.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 3.3e-91 340.1 320 73.1
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.3e-91 339.7 337 70.3
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 7.3e-91 339.0 337 70.3
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 7.3e-91 339.0 303 73.9
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 2.1e-90 337.4 337 70.0
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 4.8e-90 336.3 303 59.4
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 3.1e-89 333.6 336 71.1
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 2.2e-87 327.4 303 71.6
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 5.1e-84 316.2 339 69.6
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 3.3e-83 313.5 338 68.6
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 1.4e-81 308.1 339 68.1
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.5e-80 304.7 317 70.0
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 3.4e-80 303.5 307 70.0
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 4.5e-80 303.1 339 67.8
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 3.0e-76 290.4 292 72.6
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 3.7e-74 283.5 338 64.5
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 1.4e-70 271.6 291 66.0
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 1.6e-69 268.1 182 74.7
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.0e-68 265.4 291 68.0
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 5.1e-68 263.1 307 49.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.1e-67 261.9 320 62.2
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 5.7e-59 233.0 211 81.0
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.2e-58 231.1 134 81.3
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.0e-52 212.2 146 70.5
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 3.9e-52 210.3 165 64.8
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.9e-47 194.1 196 79.1
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 4.1e-41 173.7 103 81.6
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.6e-37 161.8 103 79.6
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-35 155.6 126 64.3
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 2.0e-32 144.8 261 51.3
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 5.9e-32 143.3 262 49.2
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.8e-28 131.7 266 45.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.5e-27 128.6 304 32.9
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 7.0e-25 119.8 82 72.0
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 1.6e-21 108.6 81 67.9
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.5e-19 102.1 74 67.6
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.0e-16 91.7 93 53.8
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.3e-10 72.4 77 51.9
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.0e-07 62.8 103 33.0
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 2.3e-07 61.6 48 60.4
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 3.9e-07 60.8 31 96.8
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 2.5e-06 58.2 103 27.2
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 2.5e-06 58.2 31 93.5


User provided reference genes

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