Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g013650 Solanum pennellii HOM05D002720 ORTHO05D002901 4.1e-92 341.7 207 100.0
Solyc09g048970.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.9e-37 159.5 203 51.7
Sopen08g015200 Solanum pennellii HOM05D000141 ORTHO05D001968 9.9e-22 107.8 107 60.7
Sopen12g001240 Solanum pennellii HOM05D000141 ORTHO05D001968 7.1e-20 101.7 134 56.7
Solyc12g005250.2 Solanum lycopersicum HOM05D000141 ORTHO05D001968 3.5e-19 99.4 134 56.0
PGSC0003DMG400021807 Solanum tuberosum HOM05D000141 ORTHO05D001968 2.3e-18 96.7 114 65.8
CAN.G262.20 Capsicum annuum HOM05D000141 ORTHO05D001968 1.6e-16 90.5 114 73.7
Peaxi162Scf00000g00841 Petunia axillaris HOM05D000141 ORTHO05D001968 4.4e-14 82.4 144 39.6
Nitab4.5_0000749g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001968 3.8e-13 79.3 146 43.2
Solyc03g118380.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 1.3e-10 70.9 43 81.4
Sopen03g037280 Solanum pennellii HOM05D002720 ORTHO05D002901 1.3e-10 70.9 43 81.4
PGSC0003DMG400008310 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.3e-10 70.9 43 81.4
PGSC0003DMG400014251 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.3e-10 70.9 43 81.4
Nitab4.5_0006814g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 3.0e-10 69.7 43 79.1
CAN.G650.21 Capsicum annuum HOM05D002720 ORTHO05D002901 6.6e-10 68.6 43 79.1
Nitab4.5_0000092g0080 Nicotiana tabacum HOM05D000141 ORTHO05D001968 6.6e-10 68.6 85 50.6
Peaxi162Scf00065g00144 Petunia axillaris HOM05D002720 ORTHO05D002901 8.7e-10 68.2 43 76.7
Sopen02g019870 Solanum pennellii HOM05D002720 ORTHO05D002901 8.7e-10 68.2 60 60.0
PGSC0003DMG400027588 Solanum tuberosum HOM05D002720 ORTHO05D002901 8.7e-10 68.2 43 79.1
PGSC0003DMG400028430 Solanum tuberosum HOM05D002720 ORTHO05D002901 3.3e-09 66.2 43 76.7
Sc03g0009160 Simmondsia chinensis HOM05D000141 ORTHO05D001968 9.6e-09 64.7 102 66.7
Manes.07G037400 Manihot esculenta HOM05D002720 ORTHO05D002901 1.6e-08 63.9 43 67.4
Hund23319 Selenicereus undatus HOM05D000141 ORTHO05D001968 1.6e-08 63.9 179 31.8
Lalb_Chr06g0169331 Lupinus albus HOM05D002720 ORTHO05D002901 4.7e-08 62.4 49 59.2
BcaB04g18254 Brassica carinata HOM05D002720 ORTHO05D002901 6.2e-08 62.0 43 65.1
BcaC07g37842 Brassica carinata HOM05D002720 ORTHO05D002901 6.2e-08 62.0 43 65.1
A08p11370 Brassica napus HOM05D002720 ORTHO05D002901 6.2e-08 62.0 43 65.1
BolC8t48229H Brassica oleracea HOM05D002720 ORTHO05D002901 6.2e-08 62.0 43 65.1
BraA08t33130Z Brassica rapa HOM05D002720 ORTHO05D002901 6.2e-08 62.0 43 65.1
Cpa.g.sc2.369 Carica papaya HOM05D002720 ORTHO05D002901 6.2e-08 62.0 43 67.4
Nitab4.5_0000695g0070 Nicotiana tabacum HOM05D002720 ORTHO05D002901 6.2e-08 62.0 50 68.0
Ciclev10014313m.g Citrus clementina HOM05D000141 ORTHO05D001968 8.1e-08 61.6 103 41.7
Dinv44630 Davidia involucrata HOM05D002720 ORTHO05D002901 8.1e-08 61.6 43 67.4
CAN.G2602.2 Capsicum annuum HOM05D002720 ORTHO05D002901 1.1e-07 61.2 45 68.9
Thecc.10G145800 Theobroma cacao HOM05D002720 ORTHO05D002901 1.1e-07 61.2 43 67.4
CSS0035657 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 1.4e-07 60.8 43 65.1
CSS0039978 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 1.4e-07 60.8 43 65.1
Dinv03943 Davidia involucrata HOM05D000141 ORTHO05D001968 1.4e-07 60.8 91 67.0
Manes.16G017100 Manihot esculenta HOM05D000141 ORTHO05D001968 1.4e-07 60.8 102 59.8
Rhsim04G0190900 Rhododendron simsii HOM05D002720 ORTHO05D002901 1.4e-07 60.8 43 65.1
Sp7g12770 Schrenkiella parvula HOM05D002720 ORTHO05D002901 1.4e-07 60.8 43 65.1
vmacro08613 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 1.4e-07 60.8 43 65.1
GSVIVG01018108001 Vitis vinifera HOM05D002720 ORTHO05D002901 1.4e-07 60.8 43 65.1
MELO3C026776.2 Cucumis melo HOM05D002720 ORTHO05D002901 1.8e-07 60.5 43 62.8
CsaV3_2G013070 Cucumis sativus L. HOM05D002720 ORTHO05D002901 1.8e-07 60.5 43 62.8
Lj6C656T10 Lonicera japonica HOM05D002720 ORTHO05D002901 1.8e-07 60.5 43 65.1
Sed0027773 Sechium edule HOM05D002720 ORTHO05D002901 1.8e-07 60.5 43 62.8
QL09p012554 Quercus lobata HOM05D002720 ORTHO05D002901 2.4e-07 60.1 43 60.5
Solyc06g033900.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.4e-07 60.1 81 45.7
Sopen06g014100 Solanum pennellii HOM05D002720 ORTHO05D002901 2.4e-07 60.1 43 67.4
Thecc.10G145600 Theobroma cacao HOM05D002720 ORTHO05D002901 2.4e-07 60.1 43 65.1
Duzib114G0436 Durio zibethinus HOM05D002720 ORTHO05D002901 3.1e-07 59.7 43 62.8
Duzib114G1034 Durio zibethinus HOM05D002720 ORTHO05D002901 3.1e-07 59.7 43 62.8
vmacro08407 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 3.1e-07 59.7 43 62.8
Rhsim04G0192700 Rhododendron simsii HOM05D002720 ORTHO05D002901 4.0e-07 59.3 43 62.8
Actinidia05130 Actinidia chinensis HOM05D000141 ORTHO05D001968 5.3e-07 58.9 94 50.0
Hma1.2p1_0065F.1_g035630 Hydrangea macrophylla HOM05D002720 ORTHO05D002901 5.3e-07 58.9 43 65.1
Rhsim02G0115000 Rhododendron simsii HOM05D000141 ORTHO05D001968 5.3e-07 58.9 102 51.0
Gohir.A05G283100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 6.9e-07 58.5 43 60.5
Gohir.D05G284100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 6.9e-07 58.5 43 60.5
Gorai.009G298700 Gossypium raimondii HOM05D002720 ORTHO05D002901 6.9e-07 58.5 43 60.5
Cpa.g.sc81.9 Carica papaya HOM05D000141 ORTHO05D001968 9.0e-07 58.2 102 49.0
CiPaw.12G002900 Carya illinoinensis HOM05D002720 ORTHO05D002901 9.0e-07 58.2 42 64.3
Potri.008G161700 Populus trichocarpa HOM05D002720 ORTHO05D002901 9.0e-07 58.2 43 60.5
Potri.010G077300 Populus trichocarpa HOM05D002720 ORTHO05D002901 9.0e-07 58.2 43 60.5
QL09p012558 Quercus lobata HOM05D002720 ORTHO05D002901 9.0e-07 58.2 43 58.1
Thecc.10G146200 Theobroma cacao HOM05D002720 ORTHO05D002901 9.0e-07 58.2 43 62.8
Lalb_Chr16g0384831 Lupinus albus HOM05D002720 ORTHO05D002901 1.2e-06 57.8 43 60.5
Ah.06g183110 Amaranthus hybridus HOM05D000141 ORTHO05D001968 1.5e-06 57.4 102 39.2
Oeu030668.1 Olea europaea HOM05D002720 ORTHO05D002901 1.5e-06 57.4 42 61.9
Glyma.20G204700 Glycine max HOM05D002720 ORTHO05D002901 2.0e-06 57.0 49 55.1
Lj5g0020726 Lotus japonicus HOM05D002720 ORTHO05D002901 2.0e-06 57.0 43 58.1
Atru.chr4.2236 Acer truncatum HOM05D002720 ORTHO05D002901 2.6e-06 56.6 43 60.5
Solyc06g033890.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 3.4e-06 56.2 70 47.1
Solyc06g033895.1 Solanum lycopersicum HOM05D002720 ORTHO05D002901 3.4e-06 56.2 43 65.1
Actinidia40090 Actinidia chinensis HOM05D002720 ORTHO05D002901 4.4e-06 55.8 43 58.1
Cfa018743 Carpinus fangiana HOM05D002720 ORTHO05D002901 5.8e-06 55.5 41 61.0
Haze_07193 Corylus avellana HOM05D002720 ORTHO05D002901 5.8e-06 55.5 41 61.0
MSTRG.4098 Avicennia marina HOM05D002720 ORTHO05D002901 7.6e-06 55.1 43 60.5
Eucgr.H03255 Eucalyptus grandis HOM05D002720 ORTHO05D002901 7.6e-06 55.1 43 55.8
Eucgr.L02850 Eucalyptus grandis HOM05D002720 ORTHO05D002901 7.6e-06 55.1 43 55.8
Hund23534 Selenicereus undatus HOM05D000141 ORTHO05D001968 7.6e-06 55.1 102 42.2
DCAR_024924 Daucus carota HOM05D000141 ORTHO05D001968 9.9e-06 54.7 100 45.0
Thhalv10026369m.g Eutrema salsugineum HOM05D002720 ORTHO05D002901 9.9e-06 54.7 43 55.8
Phvul.L002059 Phaseolus vulgaris HOM05D002720 ORTHO05D002901 9.9e-06 54.7 49 51.0


User provided reference genes

Program Settings