Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g007360 Solanum pennellii HOM05D003245 ORTHO05D004125 4.0e-32 141.0 78 100.0
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 8.3e-30 133.3 76 96.1
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 8.3e-30 133.3 76 96.1
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 8.3e-30 133.3 76 96.1
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 8.3e-30 133.3 76 96.1
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 8.3e-30 133.3 76 96.1
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 1.1e-29 132.9 76 94.7
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 1.1e-29 132.9 76 94.7
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.1e-29 132.9 76 94.7
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 4.1e-29 131.0 76 94.7
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 5.4e-29 130.6 76 93.4
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 9.1e-29 129.8 76 90.8
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 9.1e-29 129.8 76 90.8
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 1.2e-28 129.4 76 93.4
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 1.2e-28 129.4 76 93.4
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 1.6e-28 129.0 76 92.1
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 1.6e-28 129.0 76 92.1
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 2.0e-28 128.6 76 90.8
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 2.0e-28 128.6 76 90.8
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 2.0e-28 128.6 76 90.8
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 2.7e-28 128.3 76 92.1
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 2.7e-28 128.3 76 90.8
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 2.7e-28 128.3 76 92.1
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 2.7e-28 128.3 76 92.1
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 2.7e-28 128.3 76 92.1
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 2.7e-28 128.3 76 92.1
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 3.5e-28 127.9 76 90.8
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 3.5e-28 127.9 76 92.1
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 3.5e-28 127.9 76 92.1
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 3.5e-28 127.9 76 90.8
Eucgr.C02287 Eucalyptus grandis HOM05D003245 ORTHO05D004125 3.5e-28 127.9 76 90.8
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 90.8
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 4.5e-28 127.5 76 89.5
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 5.9e-28 127.1 76 88.2
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 5.9e-28 127.1 76 89.5
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 5.9e-28 127.1 76 89.5
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 5.9e-28 127.1 76 89.5
Actinidia04152 Actinidia chinensis HOM05D003245 ORTHO05D004125 7.7e-28 126.7 76 89.5
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 7.7e-28 126.7 76 88.2
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 7.7e-28 126.7 76 88.2
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 1.0e-27 126.3 76 89.5
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 1.0e-27 126.3 76 90.8
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 1.0e-27 126.3 76 90.8
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 1.0e-27 126.3 76 90.8
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 1.3e-27 125.9 76 89.5
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.7e-27 125.6 76 86.8
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.7e-27 125.6 76 86.8
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.7e-27 125.6 76 86.8
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 1.7e-27 125.6 76 89.5
Oeu056516.1 Olea europaea HOM05D002774 ORTHO05D000116 2.2e-27 125.2 77 88.3
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 2.2e-27 125.2 76 90.8
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 2.9e-27 124.8 76 89.5
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 2.9e-27 124.8 76 90.8
Nn2g12708 Nelumbo nucifera HOM05D003245 ORTHO05D004125 3.8e-27 124.4 76 86.8
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 89.5
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 86.8
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 5.0e-27 124.0 76 90.8
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 89.5
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 89.5
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 89.5
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 89.5
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 89.5
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 89.5
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 86.8
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 6.5e-27 123.6 76 86.8
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 8.5e-27 123.2 76 85.5
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 8.5e-27 123.2 76 85.5
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 8.5e-27 123.2 76 86.8
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 8.5e-27 123.2 76 89.5
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 8.5e-27 123.2 76 88.2
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 8.5e-27 123.2 76 88.2
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 88.2
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 88.2
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 84.2
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 88.2
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 85.5
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 88.2
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 86.8
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 88.2
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 86.8
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 1.1e-26 122.9 76 85.5
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 1.9e-26 122.1 76 85.5
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 84.2
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 86.8
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 86.8
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 86.8
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 86.8
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 86.8
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 88.2
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 86.8
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 2.5e-26 121.7 76 85.5
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.2e-26 121.3 76 84.2
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.2e-26 121.3 76 84.2
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 3.2e-26 121.3 76 84.2
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 3.2e-26 121.3 76 85.5
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 4.2e-26 120.9 77 83.1
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 5.5e-26 120.6 76 85.5
Gohir.D02G107400 Gossypium hirsutum HOM05D003245 ORTHO05D004125 5.5e-26 120.6 76 85.5
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 5.5e-26 120.6 76 85.5
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 7.2e-26 120.2 76 86.8
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 7.2e-26 120.2 76 88.2
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 1.2e-25 119.4 76 84.2
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 1.2e-25 119.4 76 85.5
Nitab4.5_0007820g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.6e-25 119.0 101 71.3
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.6e-25 119.0 76 85.5
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 2.1e-25 118.6 76 86.8
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 2.1e-25 118.6 76 81.6
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 2.7e-25 118.2 76 84.2
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 2.7e-25 118.2 76 81.6
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 3.6e-25 117.9 76 85.5
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 8.0e-25 116.7 76 84.2
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 8.0e-25 116.7 76 82.9
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 1.4e-24 115.9 76 78.9
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.8e-24 115.5 76 80.3
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 1.8e-24 115.5 76 84.2
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 2.3e-24 115.2 76 81.6
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 4.0e-24 114.4 67 89.6
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 1.5e-23 112.5 69 87.0
A03p59700 Brassica napus HOM05D003245 ORTHO05D004125 5.7e-23 110.5 76 85.5
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 7.5e-23 110.2 76 78.9
BcaNung00534 Brassica carinata HOM05D003245 ORTHO05D004125 9.8e-23 109.8 76 82.9
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.3e-22 109.4 101 67.3
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 1.3e-22 109.4 76 80.3
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 8.3e-22 106.7 76 77.6
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.2e-20 102.8 76 72.4
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 1.6e-20 102.4 76 73.7
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 5.0e-19 97.4 76 64.5
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 6.6e-19 97.1 76 65.8
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 7.2e-18 93.6 75 65.3
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 1.6e-17 92.4 51 88.2
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 2.1e-17 92.0 76 64.5
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 2.1e-17 92.0 76 64.5
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 2.1e-17 92.0 76 64.5
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 4.7e-17 90.9 51 88.2
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 1.8e-16 89.0 75 62.7
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.8e-16 89.0 51 88.2
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.8e-16 89.0 51 88.2
C07p57720 Brassica napus HOM05D003245 ORTHO05D004125 9.8e-15 83.2 53 88.7
SMO364G0848 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 4.6e-12 74.3 75 52.0
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 3.9e-11 71.2 44 90.9
PRCOL_00000817 Prasinoderma coloniale HOM05D003245 ORTHO05D004125 5.6e-10 67.4 77 48.1
Cre07.g326400 Chlamydomonas reinhardtii HOM05D003245 ORTHO05D004125 2.1e-09 65.5 75 49.3
RcHm_v2.0_Chr4g0439321 Rosa chinensis HOM05D003245 ORTHO05D004125 2.1e-09 65.5 44 77.3
BolC7t46233H Brassica oleracea HOM05D003245 ORTHO05D004125 2.0e-07 58.9 43 74.4


User provided reference genes

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