Gene: AT4G30260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G30260
  • Transcript Identifier AT4G30260.2
  • Gene Type Coding gene
  • Location Chr4 : 14816890-14818947 : negative

Gene Family Information

  • ID HOM05D003245
  • #Genes/#Species 211/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G30260.2
  • Alias YIP4b,YPT/RAB GTPase Interacting Protein 4b
  • uniprot Q93VH1

Descriptions

  • Description Integral membrane Yip1 family protein
  • Computational description Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G18840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0052324
IMP
Gene Ontologyplant-type cell wall cellulose biosynthetic process1
GO:0015031
IEA
GOA Databaseprotein transport
GO:0071555
IEA
GOA Databasecell wall organization
GO:0051223
IMP
Gene Ontologyregulation of protein transport2
GO:0048766
IMP
Gene Ontologyroot hair initiation2
GO:0099402
IMP
Gene Ontologyplant organ development1
GO:0048364
IMP
Gene Ontologyroot development1
GO:0045489
IMP
Gene Ontologypectin biosynthetic process1
GO:0015774
IGI
Gene Ontologypolysaccharide transport1
GO:0009826
IMP
Gene Ontologyunidimensional cell growth1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042803
IDA
Gene Ontologyprotein homodimerization activity1
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005829
IDA
GOA Databasecytosol
GO:0005768
IDA
GOA Databaseendosome
GO:0005768
HDA
Gene Ontologyendosome4
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane5
GO:0005794
IDA
IEA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus6
GO:0005634
ISM
Gene Ontologynucleus
GO:0032588
IDA
Gene Ontologytrans-Golgi network membrane1
GO:0005802
IDA, HDA
Gene Ontologytrans-Golgi network1 4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006977 Yip1 domain
Mapman id Description
22.5.3.2.2 Vesicle trafficking.exocytic trafficking.secretory vesicle trafficking.ECHIDNA-YIP trafficking complex.component YIP4