Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 7.3e-181 637.1 322 100.0
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 5.2e-179 630.9 322 99.1
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 7.1e-168 594.0 322 93.5
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.3e-165 585.1 312 93.6
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.0e-163 578.2 307 94.1
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 7.6e-138 494.2 322 77.0
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.6e-135 486.5 322 75.5
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.8e-134 483.0 323 74.9
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.5e-133 479.2 322 73.6
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 3.3e-133 478.8 320 74.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 2.8e-132 475.7 322 73.3
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 8.1e-132 474.2 299 77.6
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 6.9e-131 471.1 321 72.6
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.2e-130 470.3 323 72.1
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.6e-130 469.2 322 71.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.4e-130 468.8 320 72.2
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 4.5e-130 468.4 319 73.0
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.8e-130 468.0 323 73.4
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 2.2e-129 466.1 320 72.8
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 6.5e-129 464.5 320 73.1
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.5e-128 462.6 320 72.5
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.5e-128 462.6 322 73.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.8e-126 456.4 320 72.2
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.9e-126 455.3 317 71.0
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 3.9e-126 455.3 320 72.2
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 5.1e-126 454.9 362 65.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 6.7e-126 454.5 311 72.3
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 1.1e-125 453.8 322 70.5
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.9e-125 453.0 322 70.5
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 3.3e-125 452.2 325 71.1
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 3.3e-125 452.2 340 70.9
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 3.3e-125 452.2 325 72.3
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 4.3e-125 451.8 324 70.4
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 7.4e-125 451.1 323 70.6
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 9.6e-125 450.7 324 71.3
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 2.8e-124 449.1 322 70.5
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.8e-124 449.1 324 70.4
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 4.8e-124 448.4 319 70.5
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 6.3e-124 448.0 319 72.1
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 8.2e-124 447.6 319 71.5
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 2.4e-123 446.0 308 71.8
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 4.1e-123 445.3 320 69.1
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 4.1e-123 445.3 320 69.1
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 5.3e-123 444.9 318 69.8
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 9.0e-123 444.1 307 72.3
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 9.0e-123 444.1 323 69.7
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 9.0e-123 444.1 322 69.6
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 2.6e-122 442.6 326 68.4
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 7.6e-122 441.0 328 69.5
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.3e-121 440.3 320 68.4
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.2e-121 439.5 321 68.8
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.9e-121 439.1 321 68.8
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 9.3e-120 434.1 300 73.3
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 4.6e-119 431.8 317 70.3
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.8e-118 429.9 322 69.3
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 3.0e-118 429.1 333 66.7
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 3.0e-118 429.1 317 70.7
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 6.3e-116 421.4 323 67.8
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.8e-115 419.9 360 62.5
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 2.4e-115 419.5 319 68.0
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 2.4e-115 419.5 320 67.5
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 6.9e-115 417.9 299 71.2
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 7.7e-114 414.5 305 70.5
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.7e-113 413.3 322 67.7
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.7e-113 413.3 308 66.9
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 3.2e-112 409.1 320 66.9
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 5.5e-112 408.3 319 64.9
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 6.1e-111 404.8 319 66.5
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.4e-110 403.7 328 63.1
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.4e-110 403.7 324 64.8
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.9e-110 402.1 325 63.1
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 8.8e-110 401.0 307 66.4
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 9.7e-109 397.5 320 61.6
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.3e-108 397.1 293 68.6
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 2.4e-107 392.9 293 67.6
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 2.4e-107 392.9 300 66.0
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 3.1e-107 392.5 296 67.6
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 3.1e-107 392.5 293 66.6
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 4.1e-107 392.1 296 67.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 3.4e-106 389.0 293 66.9
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 3.4e-106 389.0 270 72.6
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 2.2e-105 386.3 301 65.4
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.9e-105 386.0 321 64.2
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.9e-105 386.0 321 64.5
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 8.5e-105 384.4 307 64.8
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 2.5e-104 382.9 301 64.8
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 7.2e-104 381.3 304 64.5
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 7.2e-104 381.3 310 64.2
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 9.4e-104 380.9 289 68.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.2e-103 380.6 297 65.0
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.6e-103 380.2 293 66.6
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 5.1e-102 375.2 281 67.6
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 7.4e-101 371.3 307 63.5
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 7.0e-99 364.8 371 53.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 7.0e-99 364.8 323 59.8
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 3.5e-98 362.5 302 62.9
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 4.1e-91 339.0 324 57.4
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 5.9e-90 335.1 356 55.6
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.0e-89 334.3 343 55.1
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.7e-89 333.6 344 51.7
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 2.7e-87 326.2 222 75.7
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.8e-86 323.6 324 55.6
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.8e-84 315.5 219 74.4
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 6.3e-84 315.1 244 66.4
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 3.7e-76 289.3 332 51.2
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 4.9e-76 288.9 194 77.8
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.7e-68 263.8 226 64.6
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 5.9e-66 255.4 293 48.5
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.4e-61 239.6 152 74.3
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 9.8e-61 238.0 226 56.6
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 7.0e-59 231.9 339 44.5
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.9e-57 226.1 343 40.8
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 2.3e-49 200.3 202 55.4
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 6.9e-38 162.2 121 66.9
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.8e-31 140.2 176 47.7
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.0e-30 136.3 90 72.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.0e-29 134.0 172 49.4
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.9e-27 127.5 100 65.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.9e-27 127.5 100 65.0
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 5.4e-27 125.9 338 31.1
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 7.9e-26 122.1 354 28.2
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 8.7e-25 118.6 297 30.6
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-20 104.8 86 65.1
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 2.9e-20 103.6 68 72.1
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.1e-19 101.7 84 65.5
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 2.4e-19 100.5 84 64.3
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 2.4e-19 100.5 84 64.3
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 9.3e-19 98.6 78 67.9
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.5e-16 91.3 91 57.1
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 2.4e-14 84.0 52 69.2
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 2.0e-13 80.9 125 44.0
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 6.5e-12 75.9 282 24.8
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.4e-12 75.5 43 79.1
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.5e-11 73.9 64 57.8


User provided reference genes

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