Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.4e-162 576.2 291 100.0
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.2e-161 573.2 291 99.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.5e-156 555.4 291 95.5
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.4e-146 522.3 291 90.7
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 4.3e-140 501.5 291 84.2
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 4.3e-140 501.5 290 84.5
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 85.9
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 3.6e-139 498.4 290 83.8
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 8.1e-139 497.3 290 83.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.1e-138 496.9 290 84.8
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.4e-138 495.7 290 84.1
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.5e-137 493.0 290 83.1
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.6e-137 492.3 290 83.1
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 7.6e-137 490.7 292 83.2
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.3e-136 490.0 291 84.2
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 6.4e-136 487.6 291 81.8
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 6.4e-136 487.6 291 83.2
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.4e-135 486.5 290 81.4
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 9.3e-135 483.8 292 82.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.2e-134 483.4 281 84.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.6e-134 483.0 290 82.1
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.1e-134 482.6 290 80.3
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 6.0e-134 481.1 290 81.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 7.9e-134 480.7 290 82.1
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.3e-133 479.9 290 82.1
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.8e-133 479.6 290 81.0
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.8e-133 479.6 319 77.4
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.3e-133 479.2 290 81.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 3.9e-133 478.4 291 85.9
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 6.7e-133 477.6 268 88.1
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 8.7e-133 477.2 292 79.8
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 8.7e-133 477.2 290 81.7
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.9e-132 476.1 292 80.8
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.5e-132 475.7 290 79.7
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.3e-132 474.9 290 80.3
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 5.6e-132 474.6 290 80.7
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 7.4e-132 474.2 291 80.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 79.7
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.6e-131 473.0 290 80.3
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 3.7e-131 471.9 292 80.8
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.8e-131 471.5 290 79.0
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 8.1e-131 470.7 290 81.0
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 8.1e-131 470.7 290 79.7
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.5e-129 466.5 292 78.8
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.4e-129 465.3 290 78.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.5e-129 464.9 290 77.6
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 5.8e-129 464.5 290 78.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 9.9e-129 463.8 321 74.1
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.3e-128 463.4 304 76.0
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 2.9e-128 462.2 292 78.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 6.4e-128 461.1 291 79.0
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.4e-127 459.9 290 78.3
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.9e-127 459.5 290 79.0
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 5.5e-127 458.0 286 80.1
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 7.1e-127 457.6 295 76.9
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 7.1e-127 457.6 290 76.2
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.6e-126 456.4 290 76.9
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 3.5e-126 455.3 289 78.2
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 4.6e-126 454.9 324 70.4
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 7.9e-126 454.1 290 77.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.0e-125 453.8 290 77.6
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.3e-125 452.6 291 78.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 5.1e-125 451.4 290 76.2
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 8.7e-125 450.7 290 78.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.5e-124 449.9 290 75.5
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.9e-124 449.5 290 76.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 7.4e-124 447.6 290 76.6
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.4e-122 443.4 290 75.5
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 3.1e-122 442.2 290 74.8
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 6.9e-122 441.0 292 74.3
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 3.4e-121 438.7 291 74.2
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.8e-121 438.0 290 74.8
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 7.6e-121 437.6 290 74.8
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.7e-120 436.4 291 74.9
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.7e-120 436.4 294 71.8
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.5e-120 434.5 291 73.5
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 6.5e-120 434.5 291 75.3
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 6.5e-120 434.5 290 74.5
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 6.5e-120 434.5 386 61.9
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 8.4e-120 434.1 295 74.9
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.1e-119 433.7 296 71.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.5e-119 432.6 291 73.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.2e-119 431.8 290 75.5
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 7.1e-119 431.0 291 72.9
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 9.3e-119 430.6 323 68.4
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-117 426.8 309 70.2
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 3.0e-117 425.6 290 73.8
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 3.0e-117 425.6 290 73.8
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.7e-117 424.5 311 69.1
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.3e-115 420.2 290 72.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.4e-114 416.8 283 73.1
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.8e-114 416.4 290 73.1
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 5.3e-114 414.8 291 71.8
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 4.5e-113 411.8 290 72.1
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-112 409.8 290 70.3
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-112 409.8 290 70.3
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.2e-112 409.5 291 71.5
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 8.5e-112 407.5 291 70.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-111 407.1 290 73.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.9e-111 406.4 235 83.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.9e-111 406.4 290 70.0
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-111 405.2 290 70.0
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.8e-109 399.8 290 69.7
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.9e-109 398.7 292 69.5
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 8.8e-109 397.5 291 70.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.5e-108 396.7 229 84.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.5e-108 396.0 290 70.3
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.3e-108 395.6 297 71.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.3e-108 395.2 290 69.7
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 9.7e-108 394.0 290 70.0
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.8e-106 389.8 290 67.2
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.5e-105 386.7 291 67.0
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.7e-104 383.3 295 67.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.7e-104 383.3 298 66.8
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.2e-104 382.9 290 67.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.8e-101 373.2 290 65.9
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 8.8e-101 370.9 293 67.2
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.5e-97 359.0 208 85.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.4e-95 353.6 225 75.1
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 9.4e-95 350.9 291 63.6
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.2e-94 350.5 290 65.2
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.1e-94 349.7 189 88.9
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 4.4e-92 342.0 260 68.5
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.8e-91 338.6 239 71.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 5.3e-90 335.1 184 89.7
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-88 330.9 258 65.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 4.2e-87 325.5 285 60.7
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 5.2e-85 318.5 286 58.7
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.0e-77 294.3 299 54.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 8.8e-77 291.2 298 53.4
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.5e-76 290.4 188 71.8
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-74 283.9 291 57.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 9.5e-71 271.2 201 67.7
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.5e-63 246.5 294 48.6
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.7e-56 223.8 293 47.4
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.7e-56 223.8 293 47.4
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.7e-56 223.8 293 47.4
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.2e-53 212.2 268 51.5
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 9.9e-44 181.4 103 84.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-43 179.9 106 83.0
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-42 177.6 151 59.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 5.4e-42 175.6 228 47.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.4e-37 161.0 154 57.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.0e-37 159.5 154 56.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.0e-37 159.5 154 56.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 7.1e-34 148.7 85 83.5
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 7.8e-33 145.2 107 69.2
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.3e-32 144.4 194 40.7
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-32 143.3 91 74.7
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 9.3e-26 121.7 73 78.1
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 9.3e-26 121.7 73 78.1
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 3.5e-25 119.8 71 78.9
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.5e-23 113.6 188 42.0
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 4.0e-21 106.3 93 61.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.5e-20 104.4 68 70.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 7.1e-18 95.5 60 70.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 9.3e-18 95.1 128 44.5
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 4.3e-15 86.3 57 70.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.8e-13 80.9 86 48.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 9.0e-13 78.6 232 29.7
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.5e-10 70.5 56 64.3
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 2.1e-06 57.4 44 59.1
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 4.8e-06 56.2 49 57.1
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 8.2e-06 55.5 46 67.4


User provided reference genes

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