Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.6e-147 526.2 277 100.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.3e-146 523.1 277 99.3
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.1e-145 520.0 277 98.6
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 5.5e-137 491.1 276 93.1
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.5e-131 471.5 277 89.9
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 5.6e-121 438.0 277 84.5
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.2e-120 436.8 275 86.2
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.2e-109 399.4 258 82.9
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.2e-109 399.4 282 77.7
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 6.4e-109 397.9 280 78.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.4e-108 396.7 280 78.6
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 3.2e-108 395.6 284 76.8
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 9.2e-108 394.0 279 77.8
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.6e-107 393.3 275 77.8
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 2.7e-107 392.5 285 76.5
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.5e-107 392.1 277 78.0
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 4.6e-107 391.7 280 76.8
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 6.0e-107 391.3 281 75.8
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 7.8e-107 391.0 276 76.8
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.0e-106 390.6 281 77.6
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-106 390.6 281 75.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 5.1e-106 388.3 281 75.1
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 6.6e-106 387.9 280 75.0
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.1e-105 387.1 280 75.7
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.5e-105 386.7 280 75.0
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.5e-105 386.7 281 75.1
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.5e-105 386.7 284 74.6
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.9e-105 386.3 283 74.9
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.5e-105 386.0 285 75.1
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 3.3e-105 385.6 285 75.8
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 4.3e-105 385.2 285 75.4
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 4.3e-105 385.2 282 74.8
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 5.6e-105 384.8 278 75.5
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 5.6e-105 384.8 277 75.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 5.6e-105 384.8 277 75.8
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 5.6e-105 384.8 275 75.6
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 9.5e-105 384.0 278 75.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.2e-104 383.6 277 75.8
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 3.6e-104 382.1 280 74.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 3.6e-104 382.1 280 74.3
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 3.6e-104 382.1 287 73.5
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 3.6e-104 382.1 279 76.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 3.6e-104 382.1 277 76.9
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 4.7e-104 381.7 251 82.5
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.2e-104 381.3 287 74.9
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.1e-104 380.9 287 74.6
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.1e-103 380.6 285 74.0
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.4e-103 380.2 277 74.0
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.4e-103 380.2 287 74.6
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.4e-103 380.2 284 75.0
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.4e-103 380.2 285 74.4
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.8e-103 379.8 288 73.3
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.3e-103 379.4 287 74.9
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.3e-103 379.4 287 74.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 3.1e-103 379.0 276 73.2
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.1e-103 379.0 283 74.9
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.0e-103 378.6 287 74.6
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 6.8e-103 377.9 287 72.1
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 6.8e-103 377.9 283 74.6
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 8.9e-103 377.5 280 75.4
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.6e-102 375.9 286 73.8
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.4e-102 375.6 287 74.2
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 9.9e-102 374.0 261 78.2
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 9.9e-102 374.0 282 73.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 2.2e-101 372.9 285 74.0
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.9e-101 372.5 284 73.6
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 8.4e-101 370.9 281 71.5
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.1e-100 370.5 282 72.3
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.1e-100 370.5 275 74.9
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.9e-100 369.8 279 74.2
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.9e-100 369.8 279 74.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.2e-100 369.0 283 71.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 5.4e-100 368.2 278 73.0
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 7.1e-100 367.9 278 75.2
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 7.1e-100 367.9 285 72.3
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.2e-99 367.1 278 73.7
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.6e-99 366.7 280 72.9
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.6e-99 366.7 278 74.1
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 2.1e-99 366.3 284 71.8
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 2.7e-99 365.9 278 74.1
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 3.5e-99 365.5 282 74.5
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 3.5e-99 365.5 280 71.4
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.6e-99 365.2 283 73.9
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.0e-99 364.8 278 74.1
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.0e-98 364.0 277 73.3
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.0e-98 364.0 284 72.5
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.3e-98 363.6 280 72.9
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.3e-98 363.6 279 74.2
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 73.7
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 73.7
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 73.7
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 73.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 74.1
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 3.0e-98 362.5 278 73.7
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 3.0e-98 362.5 278 73.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 6.6e-98 361.3 274 73.4
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 8.6e-98 360.9 278 73.4
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-97 360.5 278 73.7
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.1e-97 360.5 278 73.7
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.5e-97 360.1 234 80.8
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.5e-97 360.1 283 69.6
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.9e-97 359.8 279 72.0
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.9e-97 359.8 234 82.9
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 5.6e-97 358.2 278 73.4
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.2e-96 357.1 276 71.7
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.6e-96 356.7 274 73.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.8e-96 355.9 284 72.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.7e-96 355.1 285 71.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.4e-95 353.6 278 70.9
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.8e-95 353.2 283 72.4
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.4e-95 352.8 284 70.8
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.1e-95 352.4 201 88.6
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.9e-95 350.9 275 71.6
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.8e-94 348.2 279 68.8
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 7.6e-94 347.8 283 71.7
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 6.4e-93 344.7 282 70.2
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.1e-89 334.0 196 85.7
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 7.6e-86 321.2 278 64.0
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 8.4e-85 317.8 201 81.1
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.6e-83 313.5 280 65.0
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.3e-80 303.9 215 73.5
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.9e-76 290.0 172 85.5
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.3e-72 277.3 248 66.5
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 6.7e-66 255.0 200 75.0
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.1e-65 254.2 165 80.6
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 4.8e-64 248.8 203 73.4
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.4e-62 242.7 163 74.2
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-61 240.7 136 90.4
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.5e-57 227.3 208 66.8
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 8.2e-56 221.5 167 68.3
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 4.5e-46 189.1 282 46.8
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.6e-41 173.3 123 73.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 9.7e-41 171.4 154 68.2
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.6e-38 164.1 98 82.7
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 5.0e-37 159.1 240 50.8
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.2e-36 155.2 240 41.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.1e-35 153.7 240 40.8
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.5e-21 105.1 83 73.5
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 5.4e-15 85.9 119 52.9
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 8.0e-11 72.0 180 30.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 5.7e-09 65.9 167 31.1
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 9.8e-09 65.1 36 86.1
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.9e-08 62.8 36 86.1
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 3.2e-07 60.1 65 52.3


User provided reference genes

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