Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g019980 Solanum pennellii HOM05D003241 ORTHO05D003812 5.9e-39 163.7 81 100.0
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.7e-30 135.6 69 97.1
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.7e-30 135.6 69 97.1
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.3e-29 131.0 77 83.1
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.3e-29 131.0 77 83.1
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 1.6e-28 129.0 77 85.7
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.8e-27 125.6 77 80.5
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 9.2e-24 113.2 77 72.7
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 9.2e-24 113.2 69 76.8
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.6e-23 112.5 69 78.3
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 2.0e-23 112.1 69 76.8
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 3.5e-23 111.3 69 78.3
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 3.5e-23 111.3 77 70.1
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 4.6e-23 110.9 69 76.8
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 4.6e-23 110.9 69 73.9
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 4.6e-23 110.9 69 75.4
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 4.6e-23 110.9 69 78.3
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.9e-23 110.5 69 73.9
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 7.8e-23 110.2 77 68.8
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 7.8e-23 110.2 77 71.4
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.0e-22 109.8 69 75.4
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.0e-22 109.8 77 70.1
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.3e-22 109.4 69 72.5
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-22 109.4 69 72.5
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.3e-22 109.4 69 73.9
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 2.3e-22 108.6 69 75.4
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 2.3e-22 108.6 77 67.5
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 3.0e-22 108.2 77 66.2
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 3.9e-22 107.8 77 66.2
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 5.0e-22 107.5 77 68.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 5.0e-22 107.5 77 70.1
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 5.0e-22 107.5 77 67.5
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 8.6e-22 106.7 77 64.9
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 8.6e-22 106.7 69 72.5
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 8.6e-22 106.7 69 72.5
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 8.6e-22 106.7 77 63.6
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 8.6e-22 106.7 69 71.0
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 8.6e-22 106.7 69 71.0
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 8.6e-22 106.7 69 71.0
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 8.6e-22 106.7 77 66.2
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 8.6e-22 106.7 77 66.2
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 8.6e-22 106.7 69 71.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.5e-21 105.9 69 71.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.9e-21 105.5 69 71.0
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.5e-21 105.1 77 64.9
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.5e-21 105.1 77 64.9
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 3.3e-21 104.8 77 64.9
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.3e-21 104.8 77 64.9
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 3.3e-21 104.8 69 69.6
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 3.3e-21 104.8 69 71.0
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 4.3e-21 104.4 69 69.6
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 4.3e-21 104.4 69 73.9
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 4.3e-21 104.4 77 66.2
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 4.3e-21 104.4 69 71.0
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 4.3e-21 104.4 69 68.1
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 4.3e-21 104.4 69 68.1
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 4.3e-21 104.4 69 68.1
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 5.6e-21 104.0 69 71.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 7.3e-21 103.6 69 69.6
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 7.3e-21 103.6 69 73.9
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 7.3e-21 103.6 69 69.6
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 7.3e-21 103.6 69 68.1
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 7.3e-21 103.6 69 68.1
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 9.5e-21 103.2 69 69.6
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 9.5e-21 103.2 69 69.6
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 9.5e-21 103.2 69 69.6
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 9.5e-21 103.2 69 69.6
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 9.5e-21 103.2 65 72.3
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.5e-21 103.2 69 69.6
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 9.5e-21 103.2 65 75.4
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 9.5e-21 103.2 69 69.6
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.2e-20 102.8 69 69.6
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.6e-20 102.4 69 73.9
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 2.1e-20 102.1 77 66.2
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.8e-20 101.7 65 76.9
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 2.8e-20 101.7 69 68.1
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 3.6e-20 101.3 69 68.1
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 3.6e-20 101.3 69 66.7
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 6.2e-20 100.5 69 68.1
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 6.2e-20 100.5 77 64.9
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.2e-20 100.5 69 66.7
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 8.0e-20 100.1 75 65.3
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 8.0e-20 100.1 69 66.7
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 8.0e-20 100.1 64 70.3
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 8.0e-20 100.1 65 69.2
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 8.0e-20 100.1 69 68.1
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.1e-19 99.8 69 72.5
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-19 99.8 65 70.8
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 1.1e-19 99.8 77 64.9
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 1.4e-19 99.4 69 68.1
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.4e-19 99.4 69 69.6
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.8e-19 99.0 69 66.7
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.8e-19 99.0 77 63.6
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.8e-19 99.0 69 65.2
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 2.3e-19 98.6 77 63.6
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 2.3e-19 98.6 69 72.5
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 3.1e-19 98.2 69 68.1
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 3.1e-19 98.2 70 70.0
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 4.0e-19 97.8 69 69.6
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.2e-18 96.3 69 66.7
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 1.2e-18 96.3 69 63.8
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.8e-18 94.0 84 58.3
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 7.5e-18 93.6 69 65.2
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.7e-17 92.4 69 66.7
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.7e-17 92.4 47 97.9
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 2.9e-17 91.7 69 65.2
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.9e-16 89.0 69 63.8
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.9e-16 89.0 69 63.8
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.1e-16 87.8 66 65.2
RcHm_v2.0_Chr1g0362541 Rosa chinensis HOM05D003241 ORTHO05D003812 4.1e-16 87.8 54 75.9
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 4.1e-16 87.8 96 52.1
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 9.2e-16 86.7 70 64.3
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 9.2e-16 86.7 70 64.3
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.6e-15 85.9 69 62.3
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 2.7e-15 85.1 69 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.5e-15 84.7 71 63.4
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 6.0e-15 84.0 69 59.4
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.0e-14 83.2 55 72.7
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 8.6e-14 80.1 53 73.6
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.1e-13 79.7 56 71.4
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.5e-13 79.3 52 73.1
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 2.5e-13 78.6 69 55.1
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 5.6e-13 77.4 47 80.9
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 2.1e-12 75.5 70 55.7
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 3.1e-11 71.6 69 53.6
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.5e-10 69.3 54 63.0
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-09 66.2 69 49.3
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 4.9e-09 64.3 69 44.9
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 1.6e-07 59.3 55 56.4
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 4.6e-07 57.8 70 45.7
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 4.6e-07 57.8 70 45.7


User provided reference genes

Program Settings