Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 2412.5 1203 100.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 2395.5 1203 99.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 2244.9 1202 91.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 2186.8 1204 89.0
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2121.3 1273 83.3
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2116.7 1383 77.6
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1756.9 1199 70.6
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1744.9 1205 69.5
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1732.6 1193 70.0
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1732.2 1191 69.6
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1728.8 1200 69.5
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1724.9 1204 68.7
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1705.6 1206 68.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1698.7 1208 67.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1669.8 1192 66.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1667.1 1211 67.5
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1665.6 1197 67.0
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1658.3 1199 67.4
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1654.4 1193 66.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1645.2 1173 67.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1645.2 1192 65.9
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1642.1 1198 66.4
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1638.6 1232 64.9
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1636.7 1197 66.2
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1633.6 1195 65.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1631.7 1199 65.9
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1629.0 1204 65.4
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1628.6 1192 65.8
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1625.9 1192 65.7
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1624.0 1195 66.2
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1623.6 1198 65.7
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1621.7 1182 66.2
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1619.4 1179 65.4
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1616.7 1195 65.1
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1616.7 1195 65.4
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1616.7 1206 65.7
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1615.1 1194 65.4
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1612.0 1201 64.9
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1611.7 1192 65.1
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1596.3 1197 64.0
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1593.9 1200 65.1
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1591.2 1203 64.3
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1587.4 1213 64.0
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1587.0 1161 66.2
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1586.2 1185 64.8
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1582.4 1192 64.9
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1581.6 1188 64.6
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1571.2 1205 62.3
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1570.8 1195 63.7
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1564.7 1227 62.2
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1563.9 1209 62.3
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1558.9 1199 62.9
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1558.9 1200 61.8
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1557.3 1197 62.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1554.7 1199 62.6
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1554.3 1204 62.8
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1554.3 1196 62.1
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1240 61.1
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1553.5 1199 62.0
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1221 60.9
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1199 62.8
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1546.2 1194 62.8
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1546.2 1199 62.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1545.8 1184 63.3
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1543.1 1199 62.6
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1535.4 1200 62.4
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1531.9 1196 63.3
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1531.5 1205 61.7
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1523.1 1191 62.2
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1520.4 1308 58.6
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1518.8 1196 62.9
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1517.3 1281 60.0
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1512.3 1253 59.5
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1510.0 1204 61.4
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1509.6 1207 60.9
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1503.4 1198 60.9
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1502.3 1209 60.5
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1502.3 1133 63.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1502.3 1205 60.5
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1498.0 1200 60.3
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1497.6 1207 60.0
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1486.9 1199 60.0
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1482.6 1199 60.1
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1471.1 1199 59.7
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1470.3 1208 59.4
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1469.9 1201 60.2
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1466.8 1181 60.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1466.1 1222 58.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1453.3 1240 58.1
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1439.1 1028 67.3
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1425.2 1195 58.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1422.9 1007 67.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1414.8 1198 58.1
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1406.0 1201 57.9
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1393.6 972 69.0
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1380.9 1208 56.4
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1365.5 1195 58.5
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1338.2 990 65.7
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1216.8 1192 53.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1195.6 1224 50.8
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1193.7 1210 50.7
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1181.0 1195 50.6
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1167.9 1198 51.3
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1125.5 1212 49.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1122.8 1178 47.4
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.8e-310 1068.9 838 60.7
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.8e-299 1031.9 856 60.7
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 9.7e-279 964.1 716 65.6
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 5.7e-271 938.3 764 58.8
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.6e-268 930.2 711 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 9.2e-245 851.3 1125 41.7
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 3.6e-241 839.3 1103 42.2
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 6.8e-232 808.5 1181 40.5
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.2e-214 750.4 753 53.7
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.4e-213 746.9 586 61.4
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 8.6e-211 738.4 497 71.2
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.2e-206 723.8 570 63.2
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.2e-189 666.4 496 65.5
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.5e-149 535.0 400 65.0
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 6.3e-145 519.6 412 63.6
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 7.8e-127 459.5 592 45.1
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 4.3e-125 453.8 716 37.6
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 9.9e-90 336.3 262 61.1
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.4e-83 315.8 375 43.2
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.1e-71 275.4 280 51.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.3e-65 256.1 304 44.7
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 2.5e-64 251.9 179 68.7
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.3e-59 234.2 308 42.2
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 3.9e-54 218.0 202 56.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.0e-45 189.1 140 66.4
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 1.2e-42 179.9 231 42.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.7e-28 132.9 207 42.5
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.1e-27 130.2 135 51.9
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 7.7e-26 124.0 150 48.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 3.5e-18 98.6 94 58.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 7.7e-18 97.4 75 60.0
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 6.8e-14 84.3 60 70.0
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.6e-13 82.4 65 64.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 8.3e-12 77.4 103 44.7
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 2.5e-08 65.9 107 34.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 1.6e-07 63.2 128 28.9
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 2.1e-07 62.8 58 55.2
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 2.8e-07 62.4 51 49.0
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 6.1e-07 61.2 49 57.1
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.4e-06 60.1 45 57.8


User provided reference genes

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