Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 0.0e+00 1589.3 805 100.0
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 0.0e+00 1574.3 805 99.0
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 0.0e+00 1488.8 854 89.1
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 0.0e+00 1130.5 769 79.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 0.0e+00 1118.2 807 75.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 0.0e+00 1087.4 835 70.9
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 4.9e-303 1044.3 790 73.8
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.7e-287 992.6 786 68.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 4.6e-285 984.6 827 64.8
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 7.2e-278 960.7 830 63.5
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.2e-274 949.1 819 62.3
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 6.5e-271 937.6 827 61.1
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.1e-270 936.8 822 61.9
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.4e-270 936.4 828 62.7
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 3.6e-269 931.8 831 62.5
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 2.6e-267 925.6 830 62.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 5.7e-267 924.5 823 60.8
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 9.7e-267 923.7 830 62.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 9.1e-265 917.1 825 61.0
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.2e-264 916.8 833 60.9
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.0e-264 916.0 835 61.4
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.9e-263 912.1 820 61.1
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 6.5e-263 911.0 817 60.1
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 4.2e-262 908.3 826 61.5
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.2e-262 907.5 824 60.6
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.7e-261 905.6 824 60.6
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.4e-260 903.3 824 60.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.2e-259 900.2 826 60.3
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-259 900.2 841 59.6
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.6e-259 899.0 811 60.5
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.4e-259 898.3 817 59.6
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.8e-258 894.8 822 60.0
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 6.3e-258 894.4 839 59.5
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 4.1e-257 891.7 839 59.0
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 7.0e-257 891.0 829 59.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.0e-256 889.4 823 60.3
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.0e-255 887.1 826 61.1
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.9e-255 885.6 813 59.2
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 2.5e-254 882.5 829 59.1
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.0e-253 877.5 821 59.3
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.4e-252 876.7 826 59.3
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 9.8e-251 870.5 831 59.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 9.8e-251 870.5 726 64.3
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.8e-250 869.0 822 60.0
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 7.0e-249 864.4 839 58.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.0e-248 862.8 809 58.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.5e-248 861.7 817 58.0
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.9e-247 859.0 827 59.3
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 6.5e-247 857.8 855 56.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 5.5e-246 854.7 828 58.7
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 1.2e-245 853.6 446 98.0
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 3.6e-245 852.0 971 52.5
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.1e-245 851.3 861 56.4
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.8e-237 825.9 849 56.2
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.1e-237 824.7 723 62.5
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 8.0e-237 824.3 817 56.9
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.0e-236 823.9 828 56.5
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.2e-235 820.5 841 56.7
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 2.6e-235 819.3 820 58.4
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.4e-233 812.8 830 56.0
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 3.2e-233 812.4 830 56.0
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.0e-231 807.4 818 56.2
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.3e-231 807.0 825 56.2
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 3.1e-228 795.8 831 55.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 5.0e-223 778.5 874 52.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 8.6e-223 777.7 867 53.6
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.3e-222 774.6 827 54.4
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 7.3e-222 774.6 847 53.6
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.4e-219 765.4 826 54.4
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 3.7e-218 762.3 922 50.4
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.7e-216 756.1 820 55.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.7e-215 753.4 920 50.7
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 6.2e-213 745.0 770 55.1
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 5.2e-212 741.9 823 53.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 2.0e-211 740.0 819 53.6
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 8.4e-210 734.6 815 52.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.4e-209 733.8 818 52.9
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.2e-209 732.6 920 49.7
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.6e-208 730.3 929 48.9
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 6.0e-208 728.4 1038 45.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 5.1e-207 725.3 755 56.6
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.5e-206 723.8 811 52.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.6e-205 720.3 699 59.9
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.8e-204 716.8 833 52.3
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 9.0e-204 714.5 809 52.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.3e-202 710.7 929 48.7
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 9.3e-201 704.5 802 52.1
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 4.6e-200 702.2 818 50.5
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.8e-197 693.0 820 51.2
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.8e-197 692.2 825 50.3
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.2e-195 687.6 542 66.4
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.3e-194 684.1 821 50.4
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.9e-194 682.9 466 74.5
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 8.4e-194 681.4 788 51.5
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 5.4e-193 678.7 842 50.7
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 3.9e-191 672.5 913 47.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.9e-190 670.2 828 50.5
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 7.4e-190 668.3 558 63.3
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 9.6e-190 667.9 800 50.5
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.3e-189 667.5 809 50.1
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 8.1e-189 664.8 817 48.3
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 2.0e-179 633.6 411 75.4
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 4.6e-176 622.5 917 46.2
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.5e-174 617.5 919 45.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 6.3e-173 612.1 785 47.5
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 4.1e-172 609.4 832 48.3
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.3e-170 604.4 832 46.9
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.5e-169 599.0 607 57.3
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.1e-168 597.0 638 55.0
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.9e-156 555.4 343 77.6
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.4e-155 553.1 357 74.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.2e-152 544.7 404 68.1
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.7e-152 543.5 356 74.2
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.9e-151 539.7 672 49.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.4e-148 530.4 1092 37.0
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 9.1e-148 528.5 356 73.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.6e-147 527.7 343 75.5
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.2e-144 518.1 449 60.6
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.7e-141 506.5 382 66.8
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.4e-140 504.6 359 68.8
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 8.5e-138 495.4 412 63.8
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 8.0e-136 488.8 810 42.6
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.4e-135 488.0 530 52.3
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 6.3e-133 479.2 353 65.4
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 5.4e-132 476.1 378 63.0
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.7e-131 472.2 299 78.9
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 8.9e-127 458.8 418 57.4
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.9e-127 458.8 681 45.4
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 3.1e-124 450.3 321 71.3
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.0e-123 447.6 365 63.3
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.6e-121 439.5 428 55.1
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 9.5e-121 438.7 738 39.4
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.8e-119 434.5 410 57.1
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 3.4e-118 430.3 471 55.2
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.4e-116 424.9 443 52.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.5e-113 414.8 441 52.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.2e-112 411.8 278 72.3
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-102 378.3 577 49.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.3e-101 375.2 476 46.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.6e-96 358.2 466 49.1
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.8e-95 354.8 241 75.5
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 3.4e-94 350.5 467 46.9
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.2e-92 343.6 749 35.8
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.7e-91 340.9 469 48.8
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.3e-90 338.6 412 51.2
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.1e-87 327.4 608 38.2
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 5.1e-82 310.1 361 51.5
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.3e-81 307.4 490 41.2
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.1e-79 302.4 197 75.1
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.8e-77 293.9 269 56.9
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 5.4e-76 290.0 411 40.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.9e-75 286.2 190 74.2
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.1e-73 282.3 481 42.2
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.4e-70 270.8 460 44.3
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.1e-68 263.1 354 47.5
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.4e-63 248.1 183 66.7
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.5e-60 238.0 348 39.1
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 9.3e-60 236.1 422 35.8
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 4.8e-56 223.8 188 62.2
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 6.3e-56 223.4 184 64.7
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.9e-51 206.5 152 65.8
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.1e-47 196.1 470 36.8
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 2.6e-46 191.4 148 64.2
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 4.2e-44 184.1 393 32.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 5.7e-41 173.7 101 83.2
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 9.7e-41 172.9 463 31.5
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.2e-35 156.0 85 84.7
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 4.5e-22 110.9 63 81.0
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.9e-21 108.2 216 38.4
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 2.9e-21 108.2 62 83.9
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.4e-20 103.2 167 43.1
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 2.7e-19 101.7 65 70.8
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 6.1e-19 100.5 228 36.4
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.7e-16 91.3 53 79.2
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 9.1e-15 86.7 58 69.0
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.5e-09 67.0 56 64.3
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-08 65.9 39 82.1
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.4e-07 62.0 59 59.3
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 2.4e-07 62.0 32 75.0
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 5.4e-07 60.8 52 61.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.6e-06 59.3 47 66.0


User provided reference genes

Program Settings