Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 2.6e-59 231.9 117 100.0
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.7e-50 202.6 106 96.2
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.8e-50 201.1 105 96.2
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 6.3e-50 200.7 105 96.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 8.2e-50 200.3 106 95.3
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.4e-49 199.5 116 86.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.4e-49 198.7 106 93.4
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.4e-49 198.7 106 94.3
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 3.1e-49 198.4 106 93.4
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.1e-49 198.4 106 92.5
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 4.1e-49 198.0 106 92.5
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 4.1e-49 198.0 106 92.5
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.3e-49 197.6 106 92.5
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 5.3e-49 197.6 106 92.5
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 5.3e-49 197.6 106 93.4
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 5.3e-49 197.6 106 92.5
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 5.3e-49 197.6 106 92.5
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 5.3e-49 197.6 106 92.5
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 5.3e-49 197.6 110 89.1
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 7.0e-49 197.2 105 93.3
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.0e-49 197.2 105 93.3
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 7.0e-49 197.2 106 93.4
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 7.0e-49 197.2 106 92.5
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 9.1e-49 196.8 106 91.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-48 196.4 106 91.5
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.2e-48 196.4 106 90.6
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.2e-48 196.4 106 92.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.2e-48 196.4 106 90.6
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.2e-48 196.4 106 90.6
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.6e-48 196.1 106 92.5
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.6e-48 196.1 105 92.4
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.7e-48 195.3 106 91.5
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.7e-48 195.3 106 89.6
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.7e-48 195.3 106 89.6
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.7e-48 195.3 104 93.3
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 2.7e-48 195.3 105 92.4
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.7e-48 195.3 106 89.6
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 3.5e-48 194.9 110 89.1
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 3.5e-48 194.9 105 92.4
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.5e-48 194.9 106 90.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.5e-48 194.5 105 91.4
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 4.5e-48 194.5 106 92.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 4.5e-48 194.5 106 92.5
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.9e-48 194.1 106 88.7
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.9e-48 194.1 106 89.6
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 5.9e-48 194.1 106 90.6
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 7.7e-48 193.7 105 91.4
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.0e-47 193.4 106 90.6
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.0e-47 193.4 105 91.4
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-47 193.0 106 91.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.2e-47 192.2 106 89.6
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 2.2e-47 192.2 106 90.6
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.9e-47 191.8 121 82.6
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.9e-47 191.8 103 93.2
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.9e-47 191.8 110 86.4
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 3.8e-47 191.4 106 89.6
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 5.0e-47 191.0 105 88.6
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.0e-47 191.0 105 90.5
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 6.5e-47 190.7 106 88.7
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 6.5e-47 190.7 106 88.7
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 6.5e-47 190.7 104 89.4
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 8.5e-47 190.3 106 89.6
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 8.5e-47 190.3 106 88.7
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.1e-46 189.9 106 87.7
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-46 189.9 106 90.6
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.5e-46 189.5 106 88.7
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.9e-46 189.1 111 87.4
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.5e-46 188.7 109 87.2
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.2e-46 188.3 106 87.7
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 5.5e-46 187.6 105 85.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 5.5e-46 187.6 106 89.6
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 9.4e-46 186.8 106 87.7
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.2e-45 186.4 116 84.5
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.6e-45 186.0 105 84.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 2.7e-45 185.3 106 83.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.7e-45 185.3 106 86.8
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 3.6e-45 184.9 105 83.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 4.7e-45 184.5 104 88.5
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-44 183.3 104 83.7
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.0e-44 183.3 104 83.7
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.0e-44 183.3 112 83.0
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.8e-44 182.6 105 82.9
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.1e-41 173.3 96 87.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.7e-40 168.7 105 82.9
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.0e-39 166.8 86 94.2
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 5.0e-39 164.5 86 93.0
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.1e-38 163.3 105 80.0
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.9e-38 162.5 105 81.9
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-38 162.2 105 78.1
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.2e-38 160.6 101 81.2
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 7.2e-38 160.6 89 89.9
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-37 159.5 86 89.5
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.8e-36 156.0 89 86.5
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 3.0e-36 155.2 105 72.4
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 5.2e-36 154.5 106 71.7
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 8.9e-36 153.7 105 71.4
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.7e-35 151.0 96 74.0
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.3e-34 149.8 95 75.8
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.0e-32 142.5 75 96.0
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 4.5e-32 141.4 75 96.0
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 5.9e-32 141.0 83 86.7
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 7.8e-32 140.6 106 71.7
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.3e-31 139.8 110 69.1
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.9e-31 138.7 106 69.8
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.8e-31 138.3 106 67.9
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.8e-31 138.3 86 82.6
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 5.0e-31 137.9 106 68.9
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.1e-30 136.7 105 70.5
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.3e-30 135.2 105 69.5
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.5e-30 133.7 105 69.5
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.2e-29 133.3 106 67.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 4.7e-29 131.3 105 65.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 6.1e-29 131.0 89 67.4
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 8.0e-29 130.6 106 67.0
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.8e-28 129.4 128 58.6
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.9e-28 127.1 91 72.5
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.2e-25 117.1 105 62.9
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.9e-22 109.4 86 67.4
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.5e-22 109.0 53 98.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.3e-22 108.6 86 67.4
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.6e-21 105.1 53 94.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.7e-21 104.8 108 61.1
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.1e-20 103.6 86 65.1
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.4e-20 103.2 53 88.7
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 2.3e-20 102.4 57 84.2
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 5.2e-20 101.3 93 60.2
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.6e-19 99.0 99 48.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-18 96.7 53 86.8
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.0e-17 90.9 99 50.5
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 1.6e-16 89.7 104 47.1
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 4.3e-14 81.6 68 58.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.6e-13 79.7 54 77.8
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 8.9e-12 73.9 112 45.5
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.1e-09 67.0 42 73.8
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.6e-08 63.2 45 64.4
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.9e-07 58.5 38 84.2
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 5.1e-07 58.2 108 39.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.6e-07 57.8 100 44.0
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 1.1e-06 57.0 38 81.6


User provided reference genes

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