Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 2.8e-277 958.0 488 100.0
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.9e-274 948.0 488 99.0
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.7e-261 905.6 488 93.9
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.4e-260 902.5 488 95.1
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.4e-247 859.4 490 89.4
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 8.3e-245 850.1 490 88.6
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.4e-228 795.4 484 83.3
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.1e-199 698.7 503 72.2
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 4.6e-195 684.9 506 70.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 6.6e-194 681.0 543 66.1
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 7.4e-193 677.6 498 70.7
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 4.8e-192 674.9 493 70.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 8.1e-192 674.1 497 70.2
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.8e-191 672.9 508 68.3
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.1e-191 672.2 496 70.8
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 5.8e-190 667.9 493 70.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 2.2e-189 666.0 509 68.4
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 2.2e-189 666.0 509 68.8
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 3.5e-187 658.7 497 68.4
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.0e-186 657.1 498 68.5
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 5.1e-186 654.8 508 67.1
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 4.3e-185 651.7 507 67.3
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.6e-184 649.8 502 67.7
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 6.2e-184 647.9 494 69.2
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 2.4e-183 646.0 440 73.2
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 6.9e-183 644.4 491 69.5
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.5e-182 643.3 495 68.3
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 2.0e-182 642.9 471 70.9
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.6e-182 642.5 495 67.9
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.6e-182 642.5 488 69.1
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 4.5e-182 641.7 507 67.1
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 2.2e-181 639.4 496 67.7
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.2e-181 639.4 489 68.3
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.9e-181 639.0 485 68.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 6.5e-181 637.9 486 66.9
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.9e-180 636.3 473 68.9
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 9.3e-180 634.0 513 65.9
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 2.1e-179 632.9 486 66.5
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 4.6e-179 631.7 501 67.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 4.6e-179 631.7 507 66.7
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 7.9e-179 630.9 490 67.8
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.3e-178 630.2 470 67.4
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.8e-178 629.8 500 66.0
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 6.7e-178 627.9 483 68.3
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 6.7e-178 627.9 500 66.4
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.5e-177 626.7 465 68.0
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 2.5e-177 625.9 409 76.3
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 5.7e-177 624.8 508 66.7
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.6e-176 623.2 492 66.5
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 2.1e-176 622.9 464 67.7
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 2.8e-176 622.5 505 64.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 3.1e-175 619.0 462 67.5
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 4.1e-175 618.6 470 68.1
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 9.0e-175 617.5 466 66.3
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 2.6e-174 615.9 506 64.2
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.3e-173 613.6 458 68.8
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.9e-172 609.8 462 66.5
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.2e-172 607.8 437 69.3
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 7.2e-172 607.8 480 67.3
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.6e-171 606.7 508 64.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.7e-171 605.9 462 66.0
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 4.6e-171 605.1 502 63.1
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 6.1e-171 604.7 451 69.2
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 6.1e-171 604.7 511 64.2
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 7.9e-171 604.4 460 68.5
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.3e-170 603.6 440 68.4
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.8e-170 603.2 493 66.3
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.8e-170 603.2 488 66.6
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 3.0e-170 602.4 399 76.7
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.1e-169 600.5 488 65.6
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.5e-169 600.1 443 69.8
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.9e-169 599.7 492 65.7
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 2.2e-168 596.3 415 72.8
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.7e-168 595.5 493 65.3
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.1e-167 594.0 493 65.7
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.1e-167 594.0 527 60.7
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.2e-166 590.5 464 67.2
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.5e-166 590.1 472 67.2
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 6.5e-165 584.7 439 69.0
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.6e-163 580.1 477 64.4
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 5.1e-162 575.1 478 63.2
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.1e-161 573.9 545 59.6
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 3.3e-161 572.4 374 77.3
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.3e-160 570.5 443 65.5
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 3.8e-157 558.9 462 62.1
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.4e-156 557.0 462 61.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.7e-152 542.3 414 67.9
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.8e-151 540.0 422 67.3
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 4.1e-151 538.9 555 53.9
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.3e-149 533.9 403 69.7
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 8.8e-146 521.2 404 66.3
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 9.1e-143 511.1 498 58.8
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 9.4e-140 501.1 452 58.2
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.4e-138 497.3 451 58.1
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 7.5e-137 491.5 407 61.7
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 3.1e-135 486.1 347 67.7
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 5.9e-134 481.9 443 58.9
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 8.5e-133 478.0 306 75.8
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.7e-131 473.0 462 55.0
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 9.8e-129 464.5 365 66.0
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.8e-122 443.7 359 63.5
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.5e-116 423.3 340 62.1
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 3.6e-115 419.5 446 50.9
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.9e-112 409.8 392 57.4
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.7e-112 409.5 503 47.5
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.6e-107 392.9 445 49.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.7e-104 384.0 438 49.5
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.7e-104 384.0 391 52.2
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 4.9e-104 382.5 271 70.5
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 3.4e-97 359.8 387 49.1
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.9e-96 355.9 254 69.7
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 6.4e-96 355.5 353 58.9
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 6.4e-88 328.9 440 43.9
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.8e-83 312.8 331 52.9
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 7.4e-76 288.9 274 56.2
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 5.5e-71 272.7 356 45.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 6.5e-64 249.2 409 37.4
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.0e-61 240.4 307 46.9
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 8.7e-53 212.2 459 30.9
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.1e-34 152.1 122 67.2
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.5e-31 141.0 130 61.5
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 5.5e-31 139.8 126 58.7
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 9.4e-31 139.0 189 45.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.1e-26 125.6 222 37.8
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.5e-23 115.2 64 78.1
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 2.1e-22 111.3 160 49.4
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.2e-19 101.3 204 34.3
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.1e-18 99.0 131 49.6
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.9e-16 90.9 67 61.2
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.5e-15 87.8 88 51.1
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.2e-15 87.4 156 41.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.0e-13 82.4 95 44.2
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.4e-10 72.0 54 63.0
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.4e-10 72.0 292 25.3
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.3e-08 64.7 77 54.5
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 3.3e-07 60.8 73 53.4


User provided reference genes

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