Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 2301.6 1180 100.0
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 2058.9 1183 89.1
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 1964.1 1119 92.3
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1595.1 1224 69.5
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1517.7 1179 65.8
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1466.8 1182 64.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1429.5 1177 60.9
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1414.8 1171 62.2
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1412.1 1176 61.1
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1401.7 1174 59.0
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1401.7 1177 61.6
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1399.8 1179 59.7
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1371.3 1177 58.4
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1362.8 1180 58.4
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1361.3 1184 56.8
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1350.5 1181 58.9
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1346.3 1173 58.4
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1343.2 1175 59.6
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1340.9 1127 60.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1338.9 1383 53.5
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1338.2 1390 51.2
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1337.0 1172 57.2
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1333.9 1175 57.2
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1332.8 1175 57.8
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1328.9 1171 59.6
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1325.8 1183 57.4
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1323.9 1173 57.0
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1320.8 1181 58.7
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1315.1 1181 56.1
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1307.7 1178 59.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1304.7 1181 57.1
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1297.3 1212 54.7
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1295.4 1177 55.1
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1295.4 1177 55.6
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1292.7 1197 56.0
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1290.4 1178 55.6
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1288.5 1178 54.9
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1285.4 1181 56.3
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1284.6 1181 56.1
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1284.2 1181 56.1
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1266.1 1175 54.7
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1256.9 1171 54.1
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1256.9 1175 56.9
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1252.3 1177 54.4
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1247.6 1169 54.6
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1247.3 1195 54.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1246.1 1169 54.2
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1243.8 1181 54.9
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1234.6 1180 54.6
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1233.4 1181 55.2
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1233.4 1136 56.2
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1230.3 1188 53.5
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1229.9 1170 55.5
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1227.2 1176 53.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1225.7 1202 53.1
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1225.3 1175 53.4
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1220.3 1180 56.0
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1213.0 1177 52.6
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1213.0 1180 54.0
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1213.0 1213 52.2
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1199.9 1172 52.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1194.5 1179 52.8
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1194.5 1173 52.7
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1190.6 1171 52.1
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1189.1 1172 52.4
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1188.7 1171 52.4
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1177.2 1178 52.0
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 0.0e+00 1176.8 770 80.4
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1176.0 1159 51.9
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1171.4 1165 52.5
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1168.7 1176 52.7
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1167.5 1055 56.5
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1160.6 1056 55.2
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1157.1 1171 50.9
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1156.4 1165 51.9
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1149.8 1171 50.6
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1137.1 1037 56.3
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1132.9 1177 50.2
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1129.0 1187 51.1
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1075.8 1182 47.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 1.6e-310 1069.7 1175 48.5
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 2.3e-301 1039.3 1188 47.6
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 5.0e-296 1021.5 1117 49.0
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 3.2e-290 1002.3 1171 48.2
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 4.5e-289 998.4 1182 45.4
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 3.3e-287 992.3 1173 45.4
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 4.9e-283 978.4 1109 49.1
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.6e-278 962.2 751 67.2
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 8.9e-277 957.6 842 60.6
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.1e-239 834.3 1100 44.4
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 5.1e-224 782.3 786 52.8
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.7e-214 750.7 716 54.1
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.1e-194 684.9 586 58.4
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.1e-185 654.1 1197 35.4
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.7e-164 583.9 427 73.5
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 4.3e-162 576.6 423 68.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 5.2e-152 543.1 1195 33.6
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 1.4e-144 518.5 466 55.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.1e-139 500.0 651 45.3
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 3.3e-130 470.7 393 60.6
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.9e-125 454.9 1097 31.2
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 2.3e-115 421.4 851 33.5
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.9e-101 375.2 522 40.6
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.5e-90 339.0 299 57.2
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 5.9e-87 327.0 422 41.5
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 5.5e-85 320.5 216 69.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 5.4e-72 277.3 183 70.5
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-61 242.3 1124 25.9
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 5.6e-61 240.7 204 59.8
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.6e-50 205.3 271 39.5
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 6.4e-49 200.7 176 60.8
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.5e-37 162.9 235 43.4
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.3e-33 149.8 123 63.4
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 8.9e-27 127.1 194 35.6
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 2.6e-26 125.6 153 47.1
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 3.4e-26 125.2 60 100.0
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 8.4e-25 120.6 506 25.7
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 3.6e-20 105.1 356 26.4
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 1.6e-15 89.7 107 46.7
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.5e-15 88.6 55 72.7
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 6.7e-14 84.3 53 71.7
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 8.1e-12 77.4 61 59.0
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 7.6e-10 70.9 51 70.6
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 2.1e-07 62.8 46 58.7
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.6e-07 61.6 46 58.7
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.3e-06 60.1 59 59.3
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 3.0e-06 58.9 57 57.9
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 5.1e-06 58.2 136 29.4
CBR_g3721 Chara braunii HOM05D000115 ORTHO05D005317 8.7e-06 57.4 97 28.9


User provided reference genes

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