Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 3.9e-204 714.5 351 100.0
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 3.9e-204 714.5 351 100.0
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 4.0e-201 704.5 351 98.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 5.3e-185 651.0 351 87.7
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 4.2e-182 641.3 339 89.7
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.7e-170 601.7 350 80.6
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.5e-168 596.3 350 78.6
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.5e-168 596.3 352 79.0
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.0e-168 595.9 351 79.5
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 7.7e-168 594.0 351 78.6
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.3e-167 593.2 351 79.5
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.8e-167 591.7 352 79.3
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.6e-165 586.3 351 78.3
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 3.0e-164 582.0 339 80.5
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 6.3e-162 574.3 352 77.0
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.4e-161 573.2 352 79.5
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.1e-161 572.0 350 76.3
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 4.1e-161 571.6 352 75.6
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 1.6e-160 569.7 352 75.9
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.6e-160 568.9 350 75.1
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 4.5e-160 568.2 352 75.3
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.9e-160 567.8 352 75.6
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.0e-159 567.0 352 73.9
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.3e-159 566.6 352 75.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.3e-159 566.6 350 78.9
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.7e-159 566.2 352 78.7
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.7e-159 566.2 350 75.7
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.7e-159 566.2 352 75.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 6.5e-159 564.3 351 74.9
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.1e-158 563.5 353 74.8
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.5e-158 563.1 352 74.1
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.9e-158 562.8 350 74.9
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 4.2e-158 561.6 351 76.9
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 7.2e-158 560.8 352 74.4
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 7.2e-158 560.8 351 76.9
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.2e-157 560.1 350 74.3
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 1.6e-157 559.7 352 75.3
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 6.1e-157 557.8 350 74.0
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 6.1e-157 557.8 350 74.0
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.4e-156 556.6 350 74.3
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.4e-156 556.6 351 73.5
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 3.0e-156 555.4 361 72.9
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 3.0e-156 555.4 374 71.1
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.7e-156 554.3 351 73.2
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 8.8e-156 553.9 352 73.3
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.0e-155 552.7 352 74.7
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 2.0e-155 552.7 351 72.6
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.3e-155 552.0 352 72.2
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.3e-154 550.1 352 72.4
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 2.8e-154 548.9 351 74.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 3.7e-154 548.5 351 74.1
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.7e-154 548.5 337 76.9
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.7e-154 548.5 352 72.7
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 4.8e-154 548.1 352 72.4
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 6.3e-154 547.7 351 72.1
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 6.3e-154 547.7 351 72.1
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.3e-154 547.7 352 72.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.4e-153 546.6 353 74.5
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.8e-153 546.2 351 74.4
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 2.4e-153 545.8 339 74.6
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.1e-153 545.0 351 71.5
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 5.3e-153 544.7 351 71.8
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 5.3e-153 544.7 351 70.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 9.1e-153 543.9 351 74.4
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.2e-152 543.5 351 71.2
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-152 542.3 351 74.1
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 2.7e-152 542.3 351 70.7
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.5e-152 541.6 352 77.3
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 7.7e-152 540.8 346 72.5
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.3e-151 540.0 355 71.3
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.7e-151 539.7 351 71.5
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.2e-151 539.3 351 70.4
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.9e-151 538.9 354 73.2
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 2.9e-151 538.9 351 70.7
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.9e-151 538.9 351 70.7
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.1e-150 537.0 351 70.4
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.9e-150 536.2 339 74.0
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 4.2e-150 535.0 407 64.6
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.5e-150 534.6 319 77.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 7.2e-150 534.3 351 69.8
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.1e-149 532.7 338 71.9
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 4.7e-149 531.6 350 72.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.1e-149 531.2 351 72.4
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 6.1e-149 531.2 351 69.8
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 6.1e-149 531.2 351 69.2
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 8.0e-149 530.8 337 71.8
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 2.2e-146 522.7 338 73.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.7e-146 521.9 346 75.1
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 3.1e-145 518.8 355 70.7
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-143 513.5 358 67.9
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.5e-142 509.2 319 74.6
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 3.4e-139 498.8 319 75.5
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.7e-138 496.5 382 64.7
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 8.6e-135 484.2 318 70.1
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 5.6e-134 481.5 338 64.5
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 5.6e-134 481.5 352 61.1
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 7.3e-134 481.1 318 73.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 1.4e-132 476.9 296 78.4
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 2.3e-132 476.1 356 62.4
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 6.8e-132 474.6 294 74.5
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.0e-131 473.0 306 72.2
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.0e-131 473.0 306 72.2
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.9e-129 466.5 293 73.0
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.1e-124 450.7 352 57.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.3e-122 443.7 322 66.8
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 4.9e-122 441.8 396 56.8
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 7.1e-121 438.0 303 68.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 4.9e-114 415.2 269 69.9
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 3.0e-111 406.0 255 73.3
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.5e-110 402.9 271 73.4
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 7.3e-110 401.4 353 59.2
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 7.8e-104 381.3 222 78.8
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.1e-103 378.6 201 87.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.9e-89 333.6 180 83.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.1e-86 324.3 358 46.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.8e-84 317.0 352 43.5
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 5.3e-76 288.9 354 43.5
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 7.6e-75 285.0 230 56.1
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.9e-74 283.1 158 79.7
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 5.0e-74 282.3 203 66.0
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.6e-72 275.8 211 62.6
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.7e-66 257.3 199 62.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-61 240.7 144 76.4
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 8.5e-50 201.8 126 73.8
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 5.5e-49 199.1 371 30.7
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.2e-47 192.6 108 81.5
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 6.5e-42 175.6 87 92.0
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.7e-40 170.2 125 64.8
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.8e-31 141.0 129 53.5
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 7.0e-28 129.0 118 55.9
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 9.1e-28 128.6 82 68.3
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 3.5e-27 126.7 211 39.3
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 8.6e-26 122.1 72 72.2
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 7.2e-25 119.0 318 26.4
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 6.1e-24 115.9 73 79.5
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.8e-20 104.4 69 68.1
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 9.2e-20 102.1 70 65.7
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.8e-16 90.5 55 70.9
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.7e-13 81.3 44 79.5
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.7e-13 80.1 54 70.4
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 2.0e-11 74.3 169 25.4
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.5e-11 73.6 53 62.3
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 7.8e-11 72.4 139 33.8
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 6.6e-10 69.3 376 22.3
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 8.6e-10 68.9 42 71.4
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 3.3e-09 67.0 58 48.3
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 4.3e-09 66.6 165 24.8
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 5.6e-09 66.2 34 82.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.8e-08 63.9 48 62.5
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.1e-07 62.0 68 42.6
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 1.1e-07 62.0 147 25.9
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 5.2e-07 59.7 143 26.6
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.9e-07 58.9 31 71.0
Sopen01g053630 Solanum pennellii HOM05D000347 ORTHO05D001997 1.2e-06 58.5 145 24.8
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.5e-06 58.2 41 56.1
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 2.0e-06 57.8 146 25.3


User provided reference genes

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