Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 3.2e-236 822.4 835 100.0
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 6.9e-183 645.2 854 82.8
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 4.7e-155 552.7 837 84.6
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 2.4e-127 460.7 514 97.5
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 7.3e-124 449.1 828 76.3
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 4.6e-118 429.9 784 80.2
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 4.3e-116 423.3 800 77.0
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 6.8e-114 416.0 814 69.4
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 3.9e-109 400.2 796 70.1
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 8.9e-106 389.0 841 72.3
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 8.9e-106 389.0 790 72.9
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 3.4e-105 387.1 784 73.2
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 2.9e-104 384.0 884 69.9
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 8.4e-104 382.5 831 72.8
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 8.4e-104 382.5 909 53.4
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 7.1e-103 379.4 820 70.7
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 2.7e-102 377.5 819 71.8
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 8.7e-101 372.5 785 76.6
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.5e-100 371.7 819 66.3
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 2.5e-100 370.9 822 73.1
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 6.2e-99 366.3 829 66.5
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 4.0e-98 363.6 744 64.7
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 1.7e-96 358.2 796 67.6
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 6.4e-96 356.3 821 72.7
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 8.4e-96 355.9 797 67.5
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 8.4e-96 355.9 797 67.5
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 1.2e-94 352.1 797 72.9
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 2.1e-94 351.3 807 73.4
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.7e-93 348.2 810 70.6
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 1.5e-92 345.1 781 67.6
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 1.3e-91 342.0 826 72.5
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.6e-91 341.7 822 72.4
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 1.6e-91 341.7 827 70.1
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 3.6e-91 340.5 794 73.2
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 4.8e-91 340.1 836 70.5
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 6.2e-91 339.7 788 72.8
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 2.6e-89 334.3 354 87.3
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 3.4e-89 334.0 842 64.3
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 4.9e-88 330.1 790 73.0
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 8.4e-88 329.3 787 74.1
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 2.7e-86 324.3 815 71.8
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 6.0e-86 323.2 822 67.3
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 1.0e-85 322.4 813 72.8
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 2.3e-85 321.2 825 71.3
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 7.4e-84 316.2 804 71.0
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 7.4e-84 316.2 809 71.2
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 2.8e-83 314.3 843 58.2
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 4.8e-83 313.5 788 73.7
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.2e-81 308.9 368 82.3
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 3.4e-81 307.4 817 70.5
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 5.8e-81 306.6 802 72.1
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 1.3e-80 305.4 764 74.1
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.9e-79 301.6 804 70.3
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.5e-79 301.2 815 70.3
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 3.2e-79 300.8 787 71.3
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 1.2e-78 298.9 802 71.6
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.2e-78 298.9 815 70.4
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 2.1e-78 298.1 841 60.9
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 3.5e-78 297.4 257 64.2
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 6.7e-77 293.1 804 70.1
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 2.5e-76 291.2 806 70.6
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 3.3e-76 290.8 791 65.4
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 4.3e-76 290.4 786 72.9
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 2.8e-75 287.7 796 64.9
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 3.1e-74 284.3 818 63.2
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 2.0e-73 281.6 805 69.7
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 2.6e-73 281.2 787 68.6
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 5.8e-73 280.0 780 73.2
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 4.9e-72 276.9 792 70.1
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 4.9e-72 276.9 849 54.2
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 2.5e-71 274.6 781 68.9
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.1e-70 271.6 806 63.5
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 1.0e-69 269.2 802 69.2
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 3.3e-68 264.2 797 61.4
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 7.4e-68 263.1 779 70.3
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.2e-67 261.5 353 75.4
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.1e-66 259.2 171 69.0
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 9.0e-66 256.1 752 70.7
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 9.0e-66 256.1 330 79.7
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 1.2e-65 255.8 785 71.2
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.2e-65 255.8 742 73.7
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 2.2e-64 251.5 326 78.5
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.2e-64 251.5 158 69.6
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 7.2e-63 246.5 327 77.1
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 1.1e-60 239.2 797 58.6
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 1.5e-60 238.8 335 74.3
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 2.8e-59 234.6 779 68.9
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 2.9e-56 224.6 781 63.8
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-55 222.2 257 58.8
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 6.1e-54 216.9 158 62.0
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 1.4e-53 215.7 155 65.2
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 2.6e-52 211.5 159 61.6
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 7.4e-52 209.9 144 66.0
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.9e-47 195.3 156 59.6
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.8e-45 188.7 152 57.2
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 2.3e-45 188.3 681 75.0
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 2.2e-43 181.8 720 70.4
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 2.4e-42 178.3 152 54.6
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 5.3e-42 177.2 144 56.2
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 2.6e-41 174.9 152 50.7
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.9e-40 171.4 150 55.3
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 3.8e-40 171.0 256 47.7
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 1.1e-39 169.5 108 67.6
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 4.2e-39 167.5 544 35.8
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 4.4e-36 157.5 178 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 5.3e-34 150.6 140 50.7
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 9.4e-31 139.8 112 57.1
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 2.7e-30 138.3 143 43.4
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.4e-29 136.0 181 40.9
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 7.5e-28 130.2 131 50.4
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.8e-26 125.6 67 80.6
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.8e-26 125.6 116 50.0
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 3.1e-26 124.8 119 49.6
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 5.4e-26 124.0 239 63.2
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 2.0e-25 122.1 90 62.2
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 3.5e-25 121.3 121 43.8
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.0e-21 109.8 76 59.2
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.0e-21 109.8 76 57.9
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.2e-17 96.3 100 44.0
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 4.5e-17 94.4 127 39.4
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 1.0e-13 83.2 71 57.7
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.0e-13 83.2 134 60.4
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 5.2e-13 80.9 70 58.6
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 9.8e-12 76.6 71 49.3
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 1.9e-10 72.4 123 34.1
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 1.1e-07 63.2 67 46.3
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.9e-07 62.4 70 52.9
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 4.3e-07 61.2 57 49.1
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 8.0e-06 57.0 88 34.1
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 8.0e-06 57.0 80 32.5


User provided reference genes

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