Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 0.0e+00 1126.7 603 100.0
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 0.0e+00 1104.4 602 97.0
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.5e-264 913.7 618 76.4
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 3.0e-252 875.2 562 82.4
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 4.7e-250 867.8 614 75.9
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.2e-246 855.1 639 70.6
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.5e-243 846.3 602 73.8
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.1e-242 842.4 616 72.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 4.9e-239 831.2 616 72.1
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-233 813.5 619 69.3
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 7.6e-232 807.4 617 69.2
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-230 803.1 582 72.2
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 3.2e-230 802.0 616 69.5
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 4.6e-229 798.1 618 69.4
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.3e-228 796.6 628 69.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.3e-227 792.0 614 67.9
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 9.6e-227 790.4 628 68.8
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 2.1e-226 789.3 617 70.7
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 6.2e-226 787.7 614 67.4
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.0e-225 785.0 617 67.9
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 5.3e-225 784.6 619 69.6
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.5e-224 783.1 617 67.7
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 7.6e-224 780.8 626 69.3
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 9.9e-224 780.4 610 69.5
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 4.9e-223 778.1 618 68.4
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 8.4e-223 777.3 618 67.5
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.1e-222 776.9 617 67.4
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.1e-222 776.9 628 66.9
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.7e-221 772.3 628 66.7
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 2.7e-221 772.3 628 68.0
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 6.0e-221 771.2 617 66.9
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.8e-220 769.6 618 68.3
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 3.3e-219 765.4 629 68.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-218 763.5 627 66.3
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 3.7e-218 761.9 638 65.4
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.8e-218 761.5 576 69.6
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 3.4e-216 755.4 630 65.9
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.5e-214 748.0 602 66.8
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.1e-214 747.7 653 63.9
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 4.6e-213 745.0 612 66.3
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 7.9e-213 744.2 614 65.0
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 8.7e-212 740.7 613 66.4
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 9.7e-211 737.3 615 63.9
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.7e-210 735.3 618 64.7
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.4e-209 733.4 613 66.1
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 4.1e-209 731.9 656 61.6
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.5e-208 729.9 599 65.3
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.6e-208 729.2 619 64.0
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.0e-207 727.2 636 64.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.2e-207 726.1 613 65.1
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 2.9e-207 725.7 607 66.6
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 3.8e-207 725.3 638 64.1
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 6.5e-207 724.5 596 66.4
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 6.5e-207 724.5 614 64.8
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 3.2e-206 722.2 616 64.3
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 4.2e-206 721.8 622 64.1
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 5.5e-206 721.5 618 62.9
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 7.9e-205 717.6 617 64.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 7.9e-205 717.6 612 64.9
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.1e-204 714.9 622 64.0
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.8e-202 709.1 615 63.7
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 4.8e-202 708.4 626 63.6
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.0e-199 700.7 621 63.4
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 2.9e-199 699.1 611 63.7
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 8.5e-199 697.6 611 64.0
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.1e-198 697.2 616 62.8
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 9.4e-198 694.1 621 61.5
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 7.9e-197 691.0 610 63.1
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-195 686.0 611 62.7
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 3.3e-195 685.6 638 60.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.7e-194 682.2 613 61.7
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.7e-194 682.2 634 61.5
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 6.3e-194 681.4 609 62.1
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.1e-193 680.6 566 65.5
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.8e-193 679.9 633 59.9
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.3e-193 678.3 627 61.2
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.2e-192 677.2 618 62.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-192 676.8 611 62.4
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 2.6e-192 676.0 612 61.3
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.6e-192 676.0 612 61.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.6e-192 676.0 610 62.8
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.0e-191 674.1 612 61.1
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.2e-190 669.1 610 61.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 5.5e-190 668.3 561 65.6
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.1e-189 666.4 622 62.2
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.8e-188 663.3 553 65.5
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.1e-187 660.6 621 59.9
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 4.4e-187 658.7 655 58.5
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.8e-185 653.3 626 60.4
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.1e-185 652.1 608 60.4
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 9.1e-185 651.0 617 59.6
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 4.5e-184 648.7 611 59.7
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 4.5e-184 648.7 528 64.8
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 7.7e-184 647.9 493 70.0
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.4e-180 637.1 559 62.8
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 2.0e-179 633.3 615 60.5
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.0e-179 633.3 619 57.8
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.9e-175 619.4 623 58.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.0e-169 598.2 619 56.9
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 5.9e-168 595.1 338 89.1
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.0e-167 592.0 617 56.2
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 3.4e-163 579.3 528 60.4
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 7.8e-160 568.2 559 57.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 8.0e-157 558.1 581 58.3
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.6e-151 538.5 398 70.9
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.4e-145 520.0 636 51.6
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 7.1e-145 518.5 339 77.0
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 5.1e-143 512.3 516 58.1
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-139 500.4 600 50.8
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.6e-135 485.3 318 77.0
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.2e-130 470.3 542 51.5
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 2.4e-129 466.8 337 71.5
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 6.0e-128 462.2 505 51.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.0e-127 459.9 436 59.4
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.3e-126 455.3 504 53.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.4e-123 446.0 395 63.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.9e-118 430.6 261 85.1
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.1e-100 371.7 643 38.7
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 4.5e-99 366.3 387 54.0
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.4e-91 340.1 277 66.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.0e-87 328.6 374 54.5
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 2.5e-86 323.9 196 86.7
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.5e-86 323.9 338 58.6
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.9e-84 315.8 242 69.8
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 9.1e-84 315.5 494 40.5
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-83 313.5 365 52.9
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 6.5e-82 309.3 666 35.1
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.2e-80 305.1 319 57.4
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.2e-74 284.3 230 66.1
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 3.7e-69 266.9 225 58.7
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.3e-63 247.7 344 46.5
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 4.8e-61 240.0 274 54.4
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.6e-59 235.0 269 53.2
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.8e-55 219.2 252 53.6
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.2e-53 214.5 269 50.2
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-53 214.2 220 53.6
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 5.4e-52 209.9 647 28.6
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 7.0e-52 209.5 127 84.3
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.6e-51 208.4 272 47.1
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.7e-51 206.1 262 46.9
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.9e-50 204.1 148 76.4
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.9e-49 201.4 106 96.2
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.8e-47 194.9 262 47.7
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 9.8e-46 189.1 119 79.8
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.9e-45 187.6 149 70.5
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.2e-44 182.6 208 51.0
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.1e-40 171.4 272 39.7
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.1e-40 171.4 109 80.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.1e-36 157.1 236 41.5
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-33 148.7 165 53.3
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-32 145.2 149 53.7
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-32 145.2 142 58.5
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.8e-32 144.4 210 47.6
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.6e-32 144.1 75 97.3
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 6.2e-32 143.3 75 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 5.2e-31 140.2 81 88.9
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 9.8e-30 136.0 145 51.7
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.2e-29 134.8 319 32.9
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 4.1e-28 130.6 126 59.5
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 5.4e-28 130.2 383 30.0
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 3.9e-26 124.0 352 33.5
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 5.6e-25 120.2 110 59.1
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.3e-23 114.8 174 40.8
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 6.4e-21 106.7 107 49.5
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 2.7e-19 101.3 250 30.0
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-16 91.3 77 61.0
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 7.6e-14 83.2 59 78.0
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 3.8e-13 80.9 119 47.1
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 4.9e-13 80.5 122 43.4
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.3e-09 67.8 115 38.3
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 6.2e-08 63.5 66 51.5
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 6.2e-08 63.5 66 51.5
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 1.1e-07 62.8 115 44.3
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 6.9e-07 60.1 50 60.0
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 6.9e-07 60.1 38 86.8
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 1.5e-06 58.9 48 58.3
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 2.0e-06 58.5 38 84.2
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 9.9e-06 56.2 40 65.0


User provided reference genes

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