Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.3e-134 482.3 248 100.0
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 4.8e-132 474.6 248 96.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 2.7e-119 432.2 230 92.6
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 3.6e-119 431.8 248 87.1
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 5.9e-114 414.5 212 96.2
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 7.2e-112 407.5 244 82.8
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.2e-112 407.5 252 81.7
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.8e-110 402.9 250 82.0
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.2e-110 401.4 251 82.5
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 4.4e-109 398.3 252 80.6
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.0e-106 389.4 254 76.4
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 4.7e-103 378.3 258 74.4
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.4e-102 376.7 253 72.7
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 2.0e-101 372.9 241 77.6
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.4e-101 372.1 259 73.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 4.4e-101 371.7 257 73.9
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 7.5e-101 370.9 256 75.0
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 1.3e-100 370.2 259 72.6
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 1.7e-100 369.8 239 77.4
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.7e-100 369.8 256 73.0
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 2.2e-100 369.4 239 76.6
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 3.7e-100 368.6 247 74.9
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 6.3e-100 367.9 255 74.1
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 8.3e-100 367.5 258 71.7
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 8.3e-100 367.5 249 73.5
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.1e-99 367.1 238 77.7
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 1.1e-99 367.1 258 72.5
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 1.4e-99 366.7 237 78.1
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 2.4e-99 365.9 262 71.0
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 2.4e-99 365.9 232 77.6
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 3.1e-99 365.5 251 72.9
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.1e-99 365.5 255 73.3
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.1e-99 365.2 257 73.2
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 4.1e-99 365.2 259 72.2
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 5.4e-99 364.8 252 73.0
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 9.1e-99 364.0 250 74.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.6e-98 363.2 225 80.0
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.6e-98 363.2 257 72.0
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 1.6e-98 363.2 251 74.9
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 2.7e-98 362.5 248 72.6
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 3.5e-98 362.1 254 72.4
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.5e-98 361.7 229 79.0
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 4.5e-98 361.7 252 71.8
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.0e-97 360.5 229 78.6
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 1.0e-97 360.5 246 74.0
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 1.3e-97 360.1 239 74.9
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 2.3e-97 359.4 236 76.3
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 3.8e-97 358.6 272 69.5
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.6e-97 357.8 255 72.2
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 8.6e-97 357.5 251 72.5
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.9e-96 356.3 250 72.4
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.9e-96 356.3 228 77.6
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.5e-96 355.9 251 71.3
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 5.5e-96 354.8 255 71.0
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 5.5e-96 354.8 227 78.0
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 7.2e-96 354.4 261 71.3
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 1.2e-95 353.6 225 78.2
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 2.1e-95 352.8 238 75.6
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.1e-95 352.8 248 72.6
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 3.6e-95 352.1 264 70.1
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 6.1e-95 351.3 230 74.8
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 5.2e-94 348.2 259 71.0
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 5.2e-94 348.2 255 70.6
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.8e-94 347.8 259 71.0
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.2e-93 347.1 255 70.6
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 1.2e-93 347.1 251 68.9
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.5e-93 346.7 251 68.9
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.0e-93 346.3 255 69.4
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 2.6e-93 345.9 253 68.8
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 5.7e-93 344.7 252 70.2
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.3e-92 343.6 256 69.1
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 3.7e-92 342.0 256 67.2
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 1.8e-91 339.7 245 69.8
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.8e-91 339.7 234 70.1
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 2.0e-90 336.3 246 69.5
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 1.3e-89 333.6 243 71.6
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 2.1e-87 326.2 237 69.6
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 1.4e-86 323.6 245 69.0
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.4e-86 323.6 207 78.3
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 2.3e-86 322.8 236 68.2
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 5.2e-86 321.6 245 68.6
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.2e-85 320.5 242 65.3
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.5e-85 320.1 242 66.1
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.5e-85 320.1 243 65.8
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 4.4e-85 318.5 245 67.3
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.7e-84 316.6 243 67.9
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 2.2e-84 316.2 223 69.5
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.9e-83 313.2 177 85.3
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 2.4e-83 312.8 242 64.9
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 5.4e-83 311.6 242 64.9
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.0e-82 309.7 245 63.3
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 3.5e-82 308.9 252 62.7
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.3e-81 307.0 248 64.5
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 3.3e-80 302.4 243 63.4
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 5.6e-80 301.6 242 64.0
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 5.6e-80 301.6 243 63.4
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 2.1e-79 299.7 243 63.4
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 8.9e-78 294.3 253 61.3
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 2.1e-74 283.1 280 55.0
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 3.3e-72 275.8 168 79.2
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.5e-69 266.9 162 79.6
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 9.9e-69 264.2 172 75.0
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.7e-68 263.5 171 75.4
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 2.2e-68 263.1 176 75.0
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.5e-64 250.4 244 55.7
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 2.5e-64 249.6 182 70.3
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 3.3e-64 249.2 169 76.9
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.4e-62 243.0 171 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 6.8e-62 241.5 183 63.9
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.4e-59 233.8 254 52.4
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 3.5e-58 229.2 190 60.5
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 1.4e-51 207.2 175 65.7
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 2.7e-42 176.4 233 45.5
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 4.5e-37 159.1 103 75.7
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 1.6e-31 140.6 215 43.3
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 1.6e-31 140.6 93 77.4
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 3.7e-31 139.4 89 76.4
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.2e-29 134.4 192 45.8
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 2.6e-29 133.3 80 77.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.1e-27 127.9 80 75.0
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.2e-26 124.4 203 42.9
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.5e-24 117.5 90 62.2
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.6e-23 114.0 68 77.9
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.5e-19 99.0 58 82.8
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 7.2e-19 98.6 91 59.3
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 8.8e-17 91.7 57 77.2
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 4.3e-16 89.4 218 35.3
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 7.4e-16 88.6 144 42.4
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 7.4e-16 88.6 56 75.0
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 1.3e-15 87.8 130 36.9
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.1e-11 74.7 60 61.7
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 1.4e-11 74.3 65 58.5
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 1.4e-06 57.8 93 36.6
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 1.4e-06 57.8 93 36.6
Cfa023417 Carpinus fangiana HOM05D005962 ORTHO05D123568 1.8e-06 57.4 135 30.4


User provided reference genes

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